Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,382,442 – 20,382,556 |
Length | 114 |
Max. P | 0.572135 |
Location | 20,382,442 – 20,382,556 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -20.60 |
Energy contribution | -22.64 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.10 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20382442 114 + 20766785 CCAGUUCAAUUAAGU-----GAGUGAAAACUGAGAGCUAAUCCCUCCUUGAUACGCCAGUGGAGAGAAUUACUGCUUAUGGAAUAGUGGUUUAGAUAUCGAUAUCGAACCAGCAAAAAG ...((((...(((((-----.(((....)))...((.((((.((((((((......))).)))).).)))))))))))..))))..((((((.((((....))))))))))........ ( -23.90) >DroSec_CAF1 4636 108 + 1 CCAGUUCAAUUAAAU-----GAGAGAAAACUGCCAGCUAAUCCCUCCUUGAUACGCCAGUGGACAGAACUACUGCCUAUCGAAGAGUGGUUUAGAUA------UCGAACCAGCAAAAAG ...((((.......(-----(..((....))..)).((((.(((((.((((((.((.(((((......))))))).)))))).))).)).))))...------..)))).......... ( -25.00) >DroSim_CAF1 4622 114 + 1 CCAGCUCAAUUAAAU-----GAGUGAAAACUGACAGCUAAUCCCUCCUUGAUACGCCAGUGGAGAGAACUACUGCCUAUCGAAGAGUGGUUUAGAUAUCGAUAUCGAACCAGCAAAAAG ...(((((......)-----)))).....(((....((((.(((((.((((((.((.(((((......))))))).)))))).))).)).))))...(((....)))..)))....... ( -30.30) >DroEre_CAF1 4638 113 + 1 CCAGUUCAAUUCAGUGAACUGAGUGAAAACUACCAGCUAAACCCUUCUUGAUACGCCAGUGUGAUGAACUACUGCCUAUCGAAGAGUGGUUUUGCUA------UCGAACCAGCAAAAGG ...((((.((((((....))))))..........(((.(((((((..((((((.((.(((((.....)).))))).))))))..)).))))).))).------..)))).......... ( -33.50) >DroYak_CAF1 4607 108 + 1 UUAGUUCAAUUCAAU-----GAGUGAAAACUGCCAGCUAAUCCCUCUUUGAUACGCCAGUGGAGUGAACUACUGCCUAUCGAAGAGUGGUUUGGAUA------UCGAACCAGCAAGAGG .........(((...-----.(((....)))....(((.....((((((((((.((.(((((......))))))).)))))))))).((((((....------.)))))))))..))). ( -32.40) >consensus CCAGUUCAAUUAAAU_____GAGUGAAAACUGCCAGCUAAUCCCUCCUUGAUACGCCAGUGGAGAGAACUACUGCCUAUCGAAGAGUGGUUUAGAUA______UCGAACCAGCAAAAAG ...((((..............(((....))).....((((.(((((.((((((.((.(((((......))))))).)))))).))).)).))))...........)))).......... (-20.60 = -22.64 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:48 2006