Locus 6521

Sequence ID 2R_DroMel_CAF1
Location 20,381,031 – 20,381,151
Length 120
Max. P 0.733918
window10380

overview

Window 0

Location 20,381,031 – 20,381,151
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.39
Mean single sequence MFE -34.11
Consensus MFE -22.41
Energy contribution -21.14
Covariance contribution -1.27
Combinations/Pair 1.55
Mean z-score -1.24
Structure conservation index 0.66
SVM decision value 0.43
SVM RNA-class probability 0.733918
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20381031 120 - 20766785
CUACGACUUUGCCGAUGGAAUGCUACUCAGCUACUGCUUCACCCCCGACGGCAACAAGAUGUGCCUUAGUACCUUGGAUGGCUAUCUUUUAUUGCUGAGCGUGGCCUCUUUUGAUCUGGA
...........(((((.(((.((((((((((...((((((......)).))))..((((((.(((..............))))))))).....)))))..)))))....))).))).)). ( -28.84)
>DroVir_CAF1 3826 120 - 1
UCAGCAUUUUGCCGAUGGCAAGCUGCUCACCUACAGCUUUUCACCCAACGGCAACAAGCUGUGCCUGAGCACAUUGGAUGGCUAUCUGUUGCUGCUCAGCACGGCAUCCCUCGAGAUCGA
........((((((.(((.((((((........)))))).....))).))))))...(((((((.((((((((..((((....))))..)).))))))))))))).....(((....))) ( -44.60)
>DroPse_CAF1 3274 120 - 1
CCACGACUUUGCCGAUGGUCUCUUGCUCGGCUAUUGCUUCACACCCGAUGGCAACAAGCUGUGUUUAAGCACCUUAGAUAGCUAUUUUCUCAUGCUAAGCACGGCUUCCUUUGAUCUGGA
(((.((..((((((((((((........)))))))...((......)).))))).((((((((((((.(((....(((.........)))..))))))))))))))).......))))). ( -32.50)
>DroGri_CAF1 3544 120 - 1
ACAGCAUUUUGCCGAUGGCAAGCUGCUUAACUACAGCUUUUCACCCAAUGGCAACAAGCUGUGCUUCAGCACAUUGGAUGGUUAUUUGCUGCUGUUGAGCACUGCAUCCCUUGAGCUAGA
..(((...(((((...)))))((((((((((..((((...(((.((((((((.....)))((((....))))))))).)))......))))..))))))))..)).........)))... ( -40.00)
>DroAna_CAF1 3276 120 - 1
CCAGGAUUUUUCCAAUGGACUUCUCACUAGCUACUGUUUUACUCCUGAUGGGAAUAAGAUGUGUAUGAGUACACUGGAUGGUUAUCUACUAAUUCUCAGCUCGGCGACGUUUGAUCUGGA
(((((.....((((.((.((((..(((........((((((.(((.....))).)))))))))...)))).)).))))((((.....))))....((((..((....)).))))))))). ( -26.20)
>DroPer_CAF1 3271 120 - 1
CCACGACUUUGCCGAUGGUCUCUUGCUCGGCUAUUGCUUCACACCCGAUGGCAACAAGCUGUGUUUAAGCACCUUAGAUAGCUAUUUUCUCAUGCUAAGCACGGCUUCCUUUGAUCUGGA
(((.((..((((((((((((........)))))))...((......)).))))).((((((((((((.(((....(((.........)))..))))))))))))))).......))))). ( -32.50)
>consensus
CCACGACUUUGCCGAUGGAAUGCUGCUCAGCUACUGCUUCACACCCGAUGGCAACAAGCUGUGCUUAAGCACAUUGGAUGGCUAUCUUCUAAUGCUAAGCACGGCAUCCUUUGAUCUGGA
........((((((.(((..........(((....)))......))).))))))...(((((((.((((((....((((....)))).....)))))))))))))............... (-22.41 = -21.14 +  -1.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:47 2006