| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,375,072 – 20,375,163 |
| Length | 91 |
| Max. P | 0.508081 |
| Location | 20,375,072 – 20,375,163 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 88.06 |
| Mean single sequence MFE | -25.06 |
| Consensus MFE | -18.06 |
| Energy contribution | -17.98 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20375072 91 - 20766785 AAUCGGGUCUCCAUCUUAAGCUGGGUCCACUUAAAUGUGACCUUGGAGCUGCGCUCCACUCAUAGGCAACCAUCCACAUGAACCGCU-CCAC-- ....(((((..(((.(((((.((....)))))))))).)))))(((((((((.((........)))))..(((....)))....)))-))).-- ( -22.90) >DroSec_CAF1 91758 91 - 1 AAUCGGGUCUCCAUCUUGAGCUGGGUCCACUUAAAUGUGACCUUGGAGCCGCGCUCCACUUAUAGGCAACCAUCCACAUGAACCGCU-UCAC-- .....(((..((....((((..(((((.((......)))))))((((((...))))))))))..))..))).......((((....)-))).-- ( -21.70) >DroSim_CAF1 97162 91 - 1 AAUCGGGUCUCCAUCUUGAGCUGGGUCCACUUAAAUGUGACCUUGGAGCCGCGCUCUACUCAUAGGCAACCAUCCACAUGAACCGCU-CCAG-- ....(((((..(((.(((((.((....)))))))))).)))))((((((...((.(((....)))))...(((....)))....)))-))).-- ( -23.80) >DroEre_CAF1 99131 87 - 1 AAUGGAGUCUUCAUCUUGAACUGGGUCCGCUUAAAUGUGACCUUGGAGCCGUGCUCCACUCAUAGGCAACCGU---CAUGAAC-GCU-CCAC-- ..((((((.(((((..(((...(((((.((......)))))))((((((...)))))).)))..(((....))---)))))).-)))-))).-- ( -29.50) >DroYak_CAF1 95055 93 - 1 AAGCGGGUCUCCAUCUUAAAGUGGGACCACUUAAAUGUGACCUUGGAGCCACGCUCCACUCAUAGGCAACCAUCCACAUGAAC-UGUGCCACAU .....((((.((((......)))))))).......(((((...((((((...)))))).)))))((((....((.....))..-..)))).... ( -27.40) >consensus AAUCGGGUCUCCAUCUUGAGCUGGGUCCACUUAAAUGUGACCUUGGAGCCGCGCUCCACUCAUAGGCAACCAUCCACAUGAACCGCU_CCAC__ .....(((..((..........(((((.((......)))))))((((((...))))))......))..)))....................... (-18.06 = -17.98 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:46 2006