Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,243,889 – 3,243,988 |
Length | 99 |
Max. P | 0.995750 |
Location | 3,243,889 – 3,243,988 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 76.46 |
Mean single sequence MFE | -28.81 |
Consensus MFE | -14.76 |
Energy contribution | -16.65 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.16 |
Mean z-score | -3.18 |
Structure conservation index | 0.51 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3243889 99 + 20766785 ACUGGGUGCUGGCCGAUAACUGGCUUUGCAGUUAUUCCUCGUAUUGCAUUCGGC-UUGAGCUAUCACUGCCAAGCCACCUACACCACCUACACCACCCAC------- ..((((((.((((((.....))))..((((((..........))))))...(((-(((.((.......))))))))..............)).)))))).------- ( -32.10) >DroSec_CAF1 13084 106 + 1 ACUUGGUGCUGGCCGAUAACUGGCUUUGCAGUUAUUCCUCGUAUUGCAUUCGGC-UUGAGCUAUCACUGCCAAGCCAACUACACCACCUACACCACCCACCAUCCAU ...(((((..((........((((((.(((((.((..((((....((.....))-.))))..)).))))).)))))).........))..)))))............ ( -30.03) >DroSim_CAF1 18098 106 + 1 ACUGGGUGCUGGCCGAUAACUGGCUUUGCAGUUAUUCCUCGUAUUGCAUUCGGC-UUGAGCUAUCACUGCCAAGCCAACUACACCACCUACACCACCAUCCAUCCAU ..((((((.(((..((((((((......))))))))...............(((-(((.((.......))))))))................))).))))))..... ( -30.90) >DroEre_CAF1 12779 93 + 1 ACUGGGUUCUGGCCGAUAACUGGCUUUGCAGUUAUUCCUUGUAUUGCAUUCAGC-UUGAGCUAUCACUGCCAAGCCACCCACACCACCC------------A-CCAA ..(((((...((........((((((.(((((.((..((((....((.....))-.))))..)).))))).))))))......))))))------------)-.... ( -24.74) >DroYak_CAF1 13096 100 + 1 CGUGGGUUCUGGCCGAUAACUGGCUUUGCAGUUAUUCCUCGAAUUGCAUUCGGG-CUGAGCUAUCACAGCCAUACCACCUACACAACCCAC-----CCACCA-CCAA .(((((((.((((((.....))))..(((((((........)))))))....((-(((........)))))..........)).)))))))-----......-.... ( -30.40) >DroAna_CAF1 10764 99 + 1 GCCGGCUUCUGGCCGAUAACUGGCUCUCCAGCCAUUCCCCGGAUUGCAAUGCACUAUGAGCAAUCACGGCUAACA-AAACAUUCCCCCUUCCCAAGCCUU------- ...(((((.((((((.....(((((....))))).......((((((............)))))).))))))...-.................)))))..------- ( -24.70) >consensus ACUGGGUGCUGGCCGAUAACUGGCUUUGCAGUUAUUCCUCGUAUUGCAUUCGGC_UUGAGCUAUCACUGCCAAGCCAACUACACCACCUACACCACCCAC_A_CCA_ ...(((((.((((((.....))))..((((((..........))))))...(((.(((.((.......)))))))).....)).))))).................. (-14.76 = -16.65 + 1.89)
Location | 3,243,889 – 3,243,988 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.46 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -19.36 |
Energy contribution | -20.17 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.27 |
Mean z-score | -2.36 |
Structure conservation index | 0.54 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3243889 99 - 20766785 -------GUGGGUGGUGUAGGUGGUGUAGGUGGCUUGGCAGUGAUAGCUCAA-GCCGAAUGCAAUACGAGGAAUAACUGCAAAGCCAGUUAUCGGCCAGCACCCAGU -------.((((((.(....(((.((((..(((((((((.......)).)))-))))..)))).)))..((.(((((((......)))))))...))).)))))).. ( -38.50) >DroSec_CAF1 13084 106 - 1 AUGGAUGGUGGGUGGUGUAGGUGGUGUAGUUGGCUUGGCAGUGAUAGCUCAA-GCCGAAUGCAAUACGAGGAAUAACUGCAAAGCCAGUUAUCGGCCAGCACCAAGU .(((.((.(((.(((((..(((..(((((((((((((((.......)).)))-)))(....)............)))))))..)))...))))).))).)))))... ( -38.50) >DroSim_CAF1 18098 106 - 1 AUGGAUGGAUGGUGGUGUAGGUGGUGUAGUUGGCUUGGCAGUGAUAGCUCAA-GCCGAAUGCAAUACGAGGAAUAACUGCAAAGCCAGUUAUCGGCCAGCACCCAGU .....(((.((.((((....(((.((((.((((((((((.......)).)))-))))).)))).)))...((.((((((......)))))))).)))).)).))).. ( -37.30) >DroEre_CAF1 12779 93 - 1 UUGG-U------------GGGUGGUGUGGGUGGCUUGGCAGUGAUAGCUCAA-GCUGAAUGCAAUACAAGGAAUAACUGCAAAGCCAGUUAUCGGCCAGAACCCAGU ....-(------------(((((((((((.((((((.(((((..((((....-))))..((.....)).......))))).)))))).))))..)))...))))).. ( -30.80) >DroYak_CAF1 13096 100 - 1 UUGG-UGGUGG-----GUGGGUUGUGUAGGUGGUAUGGCUGUGAUAGCUCAG-CCCGAAUGCAAUUCGAGGAAUAACUGCAAAGCCAGUUAUCGGCCAGAACCCACG ....-..((((-----((.(((((.((((.((((..(((((.(....).)))-))....((((((((...))))...))))..)))).)))))))))...)))))). ( -36.90) >DroAna_CAF1 10764 99 - 1 -------AAGGCUUGGGAAGGGGGAAUGUUU-UGUUAGCCGUGAUUGCUCAUAGUGCAUUGCAAUCCGGGGAAUGGCUGGAGAGCCAGUUAUCGGCCAGAAGCCGGC -------..(((((.((.....(.(((((.(-(((.(((.......))).)))).))))).)...((((....(((((....)))))....))))))..)))))... ( -31.50) >consensus _UGG_U_GUGGGUGGUGUAGGUGGUGUAGGUGGCUUGGCAGUGAUAGCUCAA_GCCGAAUGCAAUACGAGGAAUAACUGCAAAGCCAGUUAUCGGCCAGAACCCAGU ...................(((.(.((((.((((((.(((((.((..(((...((.....)).....)))..)).))))).)))))).))))).))).......... (-19.36 = -20.17 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:44 2006