Locus 6516

Sequence ID 2R_DroMel_CAF1
Location 20,366,991 – 20,367,103
Length 112
Max. P 0.940055
window10375

overview

Window 5

Location 20,366,991 – 20,367,103
Length 112
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 70.23
Mean single sequence MFE -35.75
Consensus MFE -17.73
Energy contribution -18.97
Covariance contribution 1.25
Combinations/Pair 1.14
Mean z-score -2.15
Structure conservation index 0.50
SVM decision value 1.31
SVM RNA-class probability 0.940055
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20366991 112 - 20766785
AUCUGGGCGUAGGGAGCUGAAGCUGGAGCUGG-AGCUGGAGCUGUAGCGGUCCUCUCAUCGAGGGCAUUGCAUUAUUUUAUUAUAAUGUGAUUAUUUAUGCUCCGGCCGAGAC
.(((.(((....(((((((((((((.((((..-......)))).)))).((((((.....))))))((..((((((......))))))..))..)))).))))).))).))). ( -45.10)
>DroSec_CAF1 83625 94 - 1
AUCUGGGGGUAGGGAGCUGGA-------------------GCUGGAGCGGUCCUCUCUUCGAGGGCAUUGCAUUAUUUUAUUAUAAUGUGAUUAUUUAUGCUCCGGCCGAGAC
.(((.(...(((....)))..-------------------(((((((((((((((.....))))))((..((((((......))))))..))......)))))))))).))). ( -36.30)
>DroEre_CAF1 86617 108 - 1
AUCUGGGAUACGGUAUAUGG-----GAUAUGGCAUAGGGAGCUGCGGCGGUCUUUUCUUCGAGGGCAUUGCAUUAUUUUAUUAUAAUGUGAUUAUUUAUGCUCCGGCCGAGAC
.(((.((...(((.......-----.....((((((((..(((.(((.((.....)).)))..)))((..((((((......))))))..))..))))))))))).)).))). ( -28.20)
>DroAna_CAF1 82809 99 - 1
--CGGGACGGAGGACGACUGUCCUGCCGCUGA-U------GCUGCU--GAUG-CUCCUGCGAGGGCAUUGCAUUAUUUUAUUAUAAUGUGAUUAUUUAUGC-CCGGCUGUGG-
--((((((((.......))))))))((((...-.------(((...--..((-(....))).((((((..((((((......))))))..).......)))-))))).))))- ( -33.41)
>consensus
AUCUGGGCGUAGGGAGAUGGA____GAGCUGG_A______GCUGCAGCGGUCCUCUCUUCGAGGGCAUUGCAUUAUUUUAUUAUAAUGUGAUUAUUUAUGCUCCGGCCGAGAC
........................................((((.((((((((((.....))))))((..((((((......))))))..))......)))).))))...... (-17.73 = -18.97 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:42 2006