Locus 6514

Sequence ID 2R_DroMel_CAF1
Location 20,362,883 – 20,362,980
Length 97
Max. P 0.710520
window10372

overview

Window 2

Location 20,362,883 – 20,362,980
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -25.30
Consensus MFE -18.20
Energy contribution -19.07
Covariance contribution 0.87
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.72
SVM decision value 0.37
SVM RNA-class probability 0.710520
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20362883 97 - 20766785
U-GAUAAAAUCUACUCGGAUCGGAGGGAGAAUCGGUCGGGCAAAGAUGCCUACUUAAGAUUGCAUUGACUUGCAUUUGGCAAGUUUUAUGAGUGAAUA
.-.........((((((((((((........))))))(((((....)))))...............(((((((.....)))))))...)))))).... ( -23.90)
>DroSec_CAF1 79529 98 - 1
UAGAUAAAAUCUGCUCGGAUCGGGAGGAGAUUCAGUCGGGCAAAGAUGCCUACUUAAGAUUGCAUUGACUUGCAUUUGGCAAGUUAUUUGAGUGAAUA
..(((..(((((.(((.......))).)))))..)))(((((....)))))(((((((.......((((((((.....)))))))))))))))..... ( -28.91)
>DroSim_CAF1 84461 98 - 1
CAGAUAAAAUCUACUCGGAUCGGGAGGAGAUUCGGUCGGGCAAAGAUGCCUACUUAAGAUUGCAUUGACUUGCAUUUGGCAAGUUAUUUGAGUGAAUA
..(((..(((((.(((.......))).)))))..)))(((((....)))))(((((((.......((((((((.....)))))))))))))))..... ( -27.81)
>DroYak_CAF1 82278 82 - 1
CAGAUAAAAUCUACUCGGAUCGG----------------GCAUAGAUGCCUACUUAAGAUUGCAUUGACUUGCAUUUGGCAAGCUAUUCGAGUGCAUA
...........(((((((((.((----------------(((....))))).................(((((.....)))))..))))))))).... ( -20.60)
>consensus
CAGAUAAAAUCUACUCGGAUCGGGAGGAGAUUCGGUCGGGCAAAGAUGCCUACUUAAGAUUGCAUUGACUUGCAUUUGGCAAGUUAUUUGAGUGAAUA
...........((((((((..................(((((....)))))..............((((((((.....)))))))))))))))).... (-18.20 = -19.07 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:39 2006