Locus 6513

Sequence ID 2R_DroMel_CAF1
Location 20,362,499 – 20,362,592
Length 93
Max. P 0.637821
window10371

overview

Window 1

Location 20,362,499 – 20,362,592
Length 93
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 75.18
Mean single sequence MFE -15.97
Consensus MFE -11.21
Energy contribution -11.71
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -0.99
Structure conservation index 0.70
SVM decision value 0.22
SVM RNA-class probability 0.637821
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20362499 93 + 20766785
UCC---CGUCCC---UGCUCAUUCAUGCAUCCG-UC-AGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAGGAAAAAA---------A---------AACA
...---....((---(...((((((((((((..-..-.))((((((...))))))..))))))))))..((((......))))....)))......---------.---------.... ( -17.60)
>DroVir_CAF1 107423 101 + 1
ACCCUGCUACCC---UGCUCAUUCAUGCAUCCCCUCGAGAUAAUUAUAAUAAUUACCUGCGUGAGUGCAGGUUUCCAUAGACCGACAAAAAAAAAAA--------AAC-------CAAC
..........((---(((..(((((((((((.....))..((((((...))))))..))))))))))))))..........................--------...-------.... ( -16.80)
>DroPse_CAF1 93088 112 + 1
UCC---CUGCCC---UGCUCAUUCAUGCAUCCG-UCCAGAUAAUUAUAAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAACCAAAAACAAAAAAAAGUAACCAAAAAAGAUA
...---......---((((((((((((((((..-....))((((((...))))))..))))))))))..((((......))))...................))))............. ( -16.40)
>DroGri_CAF1 102264 95 + 1
GC------ACCC---UGCUCAUUCAUGCAUCCCAUCGACAUAAUUAUAAUAAUUACCUGCGUGAGUGCAGGUUUCCAUAGACCGAAAAAAAACUACG--------AAA-------AACA
..------..((---(((..(((((((((((.....))..((((((...))))))..))))))))))))))..........................--------...-------.... ( -16.50)
>DroWil_CAF1 150599 90 + 1
GCC---CAUGCCCAUUGUUCAUUCAUGCAUCCG-UCCAGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUACCAUAGACAAAAAAAA-------------------------AACA
...---........(((((((((((((((((..-....))((((((...))))))..))))))))))..((...))...)))))......-------------------------.... ( -13.10)
>DroAna_CAF1 77643 88 + 1
UCC---CUGCCC---UGCUCAUUCAUGCAUCCG-UCCAGAUAAUUAUUAUAAUUACCUGCGUG-GUGUAGGUUUCCAUAGACGAAAAAAA-----G---------A---------ACCA
..(---((((..---(((........))).(((-..(((.((((((...)))))).)))..))-).)))))...................-----.---------.---------.... ( -15.40)
>consensus
UCC___CUACCC___UGCUCAUUCAUGCAUCCG_UCCAGAUAAUUAUAAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAAAAAAAAA_________A_________AACA
...................((((((((((............................))))))))))..((((......)))).................................... (-11.21 = -11.71 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:38 2006