| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,352,594 – 20,352,695 |
| Length | 101 |
| Max. P | 0.997093 |
| Location | 20,352,594 – 20,352,695 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 72.57 |
| Mean single sequence MFE | -34.98 |
| Consensus MFE | -15.18 |
| Energy contribution | -15.82 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.43 |
| SVM decision value | 2.80 |
| SVM RNA-class probability | 0.997093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20352594 101 + 20766785 -CGAGAGA--GGGCGUGCGCGGAACAGGGACGGAAGAUGCAGCAGCGCUUUCAUCGGAAUUUCGCUGC-UGCAUUUUUGUUUUUU-UUUC---UGUUUUCGUUGCGGUA -.......--.((((...((((((.(((((((.((((((((((((((..(((....)))...))))))-))))))))))))))).-.)))---)))...))))...... ( -37.40) >DroPse_CAF1 81514 102 + 1 -CGAAGAGGAG-GGGGAAGAGGAAGACG---AGAAGAUGCAGCAAUGCUUUCGUUGGAAUUUCGUGGCUUGCAUUUU-UUUUGUU-UUUUUGUUAUUUCUGUUGCGGUG -((((.(((((-....((.(((((((((---((((((((((((.(((..(((....)))...))).)).)))).)))-)))))))-))))).)).))))).)).))... ( -28.00) >DroSec_CAF1 69223 102 + 1 -CGAGAGA--GGGCGUGCGCGGAACAGGGACGGAAGGUGCAGCAGCGCUUUCAUCGGAAUUUCGCUGC-UGCAUUUUUGUUUUUUGUUUC---UGUGUUCGUUGCGGCA -.......--.((((.((((((((((((((..(((((((((((((((..(((....)))...))))))-)))))))))..)))))).)))---))))).))))...... ( -43.70) >DroEre_CAF1 71876 103 + 1 -CGAGAGAGAGGGCGUGCGCGGAACAGGGACGGAAGAUGCAGCAGCGCUUUCAUCGGAAUUUCGUAGC-UGCAUUUUUGUUUUUG-UUUC---GGUUUUCGUUGCGGCA -..........((((.((.(((((((((((((.((((((((((.(((..(((....)))...))).))-))))))))))))))))-))))---)))...))))...... ( -38.00) >DroAna_CAF1 68613 86 + 1 GCUAGGGA--UUGUG-GAGCGGAAGGG--GAAGAAGAUGCAG-----CUUUCGUUGGAAUUUCGUUGCUUGCAUUUUUGUUUUU-------------UCCGCUGCGGUU ......((--((((.-.((((((((((--...((((((((((-----(...((.........))..)).)))))))))..))))-------------)))))))))))) ( -27.80) >consensus _CGAGAGA__GGGCGUGCGCGGAACAGGGACGGAAGAUGCAGCAGCGCUUUCAUCGGAAUUUCGUUGC_UGCAUUUUUGUUUUUU_UUUC___UGUUUUCGUUGCGGUA ............(((...(((((..(((((((.((((((((((.(((..(((....)))...))).)).))))))))))))))).............)))))))).... (-15.18 = -15.82 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:35 2006