Locus 6510

Sequence ID 2R_DroMel_CAF1
Location 20,347,533 – 20,347,623
Length 90
Max. P 0.654335
window10367

overview

Window 7

Location 20,347,533 – 20,347,623
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.84
Mean single sequence MFE -26.32
Consensus MFE -18.72
Energy contribution -20.88
Covariance contribution 2.17
Combinations/Pair 1.11
Mean z-score -1.59
Structure conservation index 0.71
SVM decision value 0.25
SVM RNA-class probability 0.654335
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20347533 90 + 20766785
UGUUCCGAGAGUGUUUGGGCUAAUCAAGAUGUGGCUCAUGCAAACAACUUGAACCACAGGUCACUCAGUC----GCUCGGAACACAGAGCCCCA
(((((((((((((((((((....(((((.(((.((....))..))).))))).)).)))).)))))....----..)))))))).......... ( -28.30)
>DroSec_CAF1 64197 90 + 1
UGUUCCGAGAGUGUUUGGGCUAAUCAAGAUGUGGCUCAUGCAAACAACUUGAACCUCAGGUCACUCAGCC----GCUCGGAACUCAGAGCCCCA
.((((((((((((((((((....(((((.(((.((....))..))).)))))..)))))).)))))....----..)))))))........... ( -28.50)
>DroSim_CAF1 65672 90 + 1
UGUUCCGAGAGUGUUUGGGCUAAUCAAGAUGUGGCUCAUGCAAACAACUUGAACCUCAGGUCACUCAGCC----GCUCGGAACUCAGAGCCCCA
.((((((((((((((((((....(((((.(((.((....))..))).)))))..)))))).)))))....----..)))))))........... ( -28.50)
>DroEre_CAF1 66980 70 + 1
UGUGCCGAGAGUGUUUGGGCUAAUCAAGAUGUGGCUCAUGCAAACAACUUGAACCUCAGGUCACUCAGCC------------------------
........(((((((((((....(((((.(((.((....))..))).)))))..)))))).)))))....------------------------ ( -20.50)
>DroYak_CAF1 65881 87 + 1
UUUUCCGAGAGUGUUUGGGCUAAUCAAGAUGUGGCUCAUGCAAACAACUUGAACCCCAGGUCACUCAGCCAGCCACUCGGCAUUCAG-------
......(((((((((((((....(((((.(((.((....))..))).)))))..)))))).))))).....(((....)))..))..------- ( -28.30)
>DroAna_CAF1 62760 86 + 1
AGGUCCGAGAGUGUUUGGGCUAAUCAAGAUGUGGCUCAUGCAAACGAGUUGAACCUAAGGUCACACA--C----ACUCGAGACUGU-AGC-CGG
.((((((((.((((.(((.((..((((..(((.((....))..)))..)))).....)).))).)))--)----.)))).))))..-...-... ( -23.80)
>consensus
UGUUCCGAGAGUGUUUGGGCUAAUCAAGAUGUGGCUCAUGCAAACAACUUGAACCUCAGGUCACUCAGCC____GCUCGGAACUCAGAGC_CCA
.((((((((((((((((((....(((((.(((.((....))..))).)))))..)))))).)))))..........)))))))........... (-18.72 = -20.88 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:34 2006