Locus 6509

Sequence ID 2R_DroMel_CAF1
Location 20,344,847 – 20,344,941
Length 94
Max. P 0.561041
window10366

overview

Window 6

Location 20,344,847 – 20,344,941
Length 94
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 82.99
Mean single sequence MFE -26.80
Consensus MFE -17.60
Energy contribution -17.98
Covariance contribution 0.37
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.66
SVM decision value 0.05
SVM RNA-class probability 0.561041
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20344847 94 - 20766785
AUGGAGGGCGAGAAGCAGGAGCUGAGGAA--------GCUAUGCAUGACCAGUAGCCGAGUUCAAGACAAUGGGCCAAAGCCAUGAAAGGAACGCUUUUCAA
.((((((((.....(((..((((.....)--------))).)))...............((((....((...(((....))).))....)))))))))))). ( -26.50)
>DroSec_CAF1 61458 94 - 1
AUGGAGGGCGAGGAGCAGGUGCUGACGAA--------GCUAUGCAUGACCAGUAGCCGAGUUCAAGACAAUGGGCCAAAGCCAUGAAAGGAACGCUUUUCAA
.(((((((((..((((.(((((((.....--------((...)).....))))).))..)))).........(((....)))..........))))))))). ( -26.10)
>DroSim_CAF1 62935 102 - 1
AUGGAAGGCGAAGAGCAGGAGCUGAGGAUGCAUACUGGCUAUGCAUGACCAGUAGCCGAGUUCAAGACAAUGGGCCACAGCCAUGAAAGGAACGCUUUUCAA
.(((((((((..((((.((.((((.(.(((((((.....)))))))..)))))..))..)))).........(((....)))..........))))))))). ( -33.30)
>DroAna_CAF1 60304 81 - 1
AU--------AGGAUCGG-----AAGGGA--------GCUAUGCAUGACCAGUAGCCGGGCUCAAGACAAUGGGCCAAAGCCAUGAAAGGAACGCUUUUCAA
..--------.((.((..-----..))(.--------(((((.........)))))).((((((......))))))....)).(((((((....))))))). ( -21.30)
>consensus
AUGGAGGGCGAGGAGCAGGAGCUGAGGAA________GCUAUGCAUGACCAGUAGCCGAGUUCAAGACAAUGGGCCAAAGCCAUGAAAGGAACGCUUUUCAA
.........(((((((.....................(((((.........)))))...((((....((...(((....))).))....))))))))))).. (-17.60 = -17.98 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:33 2006