Locus 6508

Sequence ID 2R_DroMel_CAF1
Location 20,341,539 – 20,341,649
Length 110
Max. P 0.937167
window10365

overview

Window 5

Location 20,341,539 – 20,341,649
Length 110
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 75.10
Mean single sequence MFE -34.38
Consensus MFE -25.23
Energy contribution -25.98
Covariance contribution 0.75
Combinations/Pair 1.15
Mean z-score -1.45
Structure conservation index 0.73
SVM decision value 1.26
SVM RNA-class probability 0.937167
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20341539 110 - 20766785
GCCAACUGGGUACGGUAUAUCGGGC--UCGAAACUCACGUCACUAGUGAUGGAUUCGUCUCGGGCUGGUACCAGUACUGGGGCACAUAGCCACCCAUCUGGGGCGGCGGGUU
(((..((.((((((((((....(((--((((.((((.(((((....)))))))...)).))))))).))))).))))).)).......(((.(((.....))).))).))). ( -45.00)
>DroVir_CAF1 77866 91 - 1
-------------------UUGGGCUGCG--UACUCACGUUAGUAAUGAAGGAUUCGUCUCGGGCUGAUACCAAUACUGCGGCACAUAACCGCCCAUUUGAGGUGGCGGAUU
-------------------.((.((((((--((.....((((((.((((.....)))).....)))))).....))).))))).))...((((((.......).)))))... ( -23.40)
>DroPse_CAF1 69121 86 - 1
------------------------C--CUUAAACUCACGUUAGUAAUGAUGGAUUCGUCUCGGGCUGAUACCAAUACUGGGGCACGUAGCCACCCAUUUGGGGUGGCGGGUU
------------------------.--....(((((.(((((....))))).....(((((((..((....))...))))))).....(((((((.....)))))))))))) ( -31.90)
>DroGri_CAF1 76813 93 - 1
-------------------GGGGAAUUCCCAUACUUACGUAAGUAAUGAUGGAUUCGUCUCGGGCUGAUACCAAUACUGGGGCACAUAACCGCCCAUUUGGGGCGGCGGAUU
-------------------.(((....)))....((((....)))).....((((((((((((..((....))...)))))))......((((((.....)))))).))))) ( -32.10)
>DroEre_CAF1 61012 105 - 1
ACCAACUGGG-----GACAACGAGG--GGGAAACUCACGUCACUAGUGAUGGAUUCGUCUCGGGCUGGUACCAGUACUGGGGCACAUAGCCACCCAUCUGGGGCGGCGGGUU
.((((((((.-----(((......(--((....)))..))).)))))..)))(((((((((((((((....)))).))))))).....(((.(((.....))).))))))). ( -42.00)
>DroPer_CAF1 69045 87 - 1
-----------------------GA--CUUAAACUCACGUUAGUAAUGAUGGAUUCGUCUCGGGCUGAUACCAAUACUGGGGCACGUAGCCACCCAUUUGGGGUGGCGGGUU
-----------------------..--....(((((.(((((....))))).....(((((((..((....))...))))))).....(((((((.....)))))))))))) ( -31.90)
>consensus
_____________________GGGC__CCGAAACUCACGUUAGUAAUGAUGGAUUCGUCUCGGGCUGAUACCAAUACUGGGGCACAUAGCCACCCAUUUGGGGCGGCGGGUU
.....................................(((((....)))))((((((((((((..((....))...))))))).....(((((((.....)))))))))))) (-25.23 = -25.98 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:32 2006