Locus 6503

Sequence ID 2R_DroMel_CAF1
Location 20,326,543 – 20,326,637
Length 94
Max. P 0.788379
window10358

overview

Window 8

Location 20,326,543 – 20,326,637
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.82
Mean single sequence MFE -23.37
Consensus MFE -11.61
Energy contribution -12.40
Covariance contribution 0.79
Combinations/Pair 1.21
Mean z-score -2.14
Structure conservation index 0.50
SVM decision value 0.58
SVM RNA-class probability 0.788379
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20326543 94 - 20766785
GCCAUUGGGCCAACUCACUCGGAGACUGCCACACAUUCGCCCAUA-------------ACAGAAUGGAGUAAUUAAUUAAGGCUAACGAAAGCCUAAUUGCAGCAAU
((.(((((((...(((.....)))...(((...(((((.......-------------...)))))((....))......)))........))))))).))...... ( -22.20)
>DroSec_CAF1 43228 94 - 1
GCCAUUGGGCCAACUCACUCGGCCACUGCCACACAUUCGCCCAUA-------------AUAGAAUGGAGUAAUUAAUUAAGGCUUACGAAAGCCUAAUUGCAGCAAU
...((((((((.........)))).((((.........((((((.-------------.....)))).))....(((((.(((((....)))))))))))))))))) ( -23.90)
>DroSim_CAF1 44753 94 - 1
ACCAUUGGGCCAACUCACUCGGCCACUGCCACACAUUCGCCCAUA-------------ACAGAAUGGAGUAAUUAAUUAAGGCUAACGAAAGCCUAAUUGCAGCAAU
...((((((((.........)))).((((.........((((((.-------------.....)))).))....(((((.((((......))))))))))))))))) ( -23.20)
>DroEre_CAF1 46059 94 - 1
GCCAUUGGGCCAGUUCCCUCGGCCACUGCCACACAUGCGCCCAUU-------------ACAGAAUGGAGUAAUUAAUUACGGCUAACGAAAGCCUAAUUGCAGCAAU
...((((((((((....)).)))).((((......(((..(((((-------------....))))).)))...(((((.((((......))))))))))))))))) ( -25.70)
>DroYak_CAF1 43929 73 - 1
GCCAUUGGGCC---------------------ACAUUCGCCCAUA-------------ACAGAAUGGAGCAAUUAAUUACGGCUAACGAAAGCCUAAUUGCAGCAAU
.(((((((((.---------------------......)))))..-------------.....)))).(((((((.....((((......)))))))))))...... ( -20.31)
>DroPer_CAF1 50872 102 - 1
GGCUCCUGGCCAACG-----GUUCUCUGCCACACAUUCAUCCAUCAGGCAACUACGCCAAAGAAUGGUGUAAUUAAUUACGCCAAACGAAAGCCUAAUUACUGCAAU
((((..((((....(-----((.....)))...............((....))..)))).....((((((((....))))))))......))))............. ( -24.90)
>consensus
GCCAUUGGGCCAACUCACUCGGCCACUGCCACACAUUCGCCCAUA_____________ACAGAAUGGAGUAAUUAAUUAAGGCUAACGAAAGCCUAAUUGCAGCAAU
.....(((((..........(((....)))........))))).........................(((((((.....((((......)))))))))))...... (-11.61 = -12.40 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:26 2006