Locus 6501

Sequence ID 2R_DroMel_CAF1
Location 20,320,197 – 20,320,300
Length 103
Max. P 0.841263
window10355

overview

Window 5

Location 20,320,197 – 20,320,300
Length 103
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 74.81
Mean single sequence MFE -25.11
Consensus MFE -9.99
Energy contribution -11.52
Covariance contribution 1.53
Combinations/Pair 1.26
Mean z-score -2.24
Structure conservation index 0.40
SVM decision value 0.75
SVM RNA-class probability 0.841263
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20320197 103 + 20766785
CAAGUGAGAUAUCAGAAUGGGAAAAGCUUAAGGGCAUUCCUCUCUUCCUGUUCACUUAUGACCUUCCAUGCAAUACAGUGGCAUUAUGUUAAUCCCUGAC-AUA
.(((((((.....(((..(((((..(((....))).))))).))).....)))))))........((((........))))...(((((((.....))))-))) ( -20.90)
>DroSec_CAF1 36986 103 + 1
CAAGUGAGAUAUCAGAAUGGGAAAAGCUUAAGGGCUUUCCUCUCUUCCUGCUCACUUAUGACCUUCCAUGGAAUACAGUGGCAUUAUGUUAAUCUCAGCC-AUA
.(((((((.....(((..((((((.(((....))))))))).))).....)))))))....((......))......(((((...............)))-)). ( -26.16)
>DroSim_CAF1 38521 103 + 1
CAAGUGAGAUAUCAGAAUGGGAAAAGCUUAAGGGCUUUCCUCUCUUCCUGCUCACUUAUGACCUUCCAUGGAACACAGUGGCAUUAUGUUAAUCUCAGCC-AUA
.(((((((.....(((..((((((.(((....))))))))).))).....)))))))....((......))......(((((...............)))-)). ( -26.16)
>DroEre_CAF1 39675 93 + 1
CAAGUGAGAUAUCAGAAUGGGGAAAGCUUAAAGGCUUUCCUCUCUUCCUGUCCAUGUAUGGCCUUUU-UG---------GCCAUUAUGUUAAUCUCUGCC-AUA
.....(((((..(((...((((((((((....)))))))))).....)))..((((.((((((....-.)---------)))))))))...)))))....-... ( -33.30)
>DroWil_CAF1 67631 95 + 1
AAAGUGAGAUAUCACA----GAAAAGCUUGAAUUAUUUCAUGAUUUCAUACUU-----UUGCUUUUAAACUAAUGAAAUAAAAUUAUGGCAAUCAAGGUCUAUA
...((((....))))(----((......((((....))))((((((((((.((-----(((.(((((......)))))))))).))))).)))))...)))... ( -15.40)
>DroYak_CAF1 37482 93 + 1
CAAGUGAGAUAUCAGAAUGGGAAAAGCCUAAAGGCUUUCCUCUCUUCCUGUUCAUUUGCGGCCUUUA-UG---------GCCAUUAUGUUAAUCUCUGCC-ACA
.....(((((....((((((((((((((....))))).......)))))))))......((((....-.)---------))).........)))))....-... ( -28.71)
>consensus
CAAGUGAGAUAUCAGAAUGGGAAAAGCUUAAAGGCUUUCCUCUCUUCCUGCUCACUUAUGACCUUCCAUG_AAUACAGUGGCAUUAUGUUAAUCUCUGCC_AUA
.(((((((.....(((..((((((.(((....))))))))).))).....)))))))............................................... ( -9.99 = -11.52 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:23 2006