Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,317,143 – 20,317,249 |
Length | 106 |
Max. P | 0.697573 |
Location | 20,317,143 – 20,317,249 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.21 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -26.44 |
Energy contribution | -26.58 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.28 |
Mean z-score | -1.67 |
Structure conservation index | 0.68 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20317143 106 - 20766785 UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCUAGGAGGGCGCACCACCAGGGAAGCUUGAGCCUCUUGGCUGUGACACUUUGCAAAGGGUGGUGGGCUA (((((.((((((.((.((....)).))..)))))))))))....(((.(((((((.(.((((....((((....))))......)))).)....))))))).))). ( -40.80) >DroPse_CAF1 40918 97 - 1 UGGAGCAGCUUCAUCAGCAGCAGCAUAAAGAGGUUCUCCAGGAGCGGACACCACCAAGGCAUCUGCAGCCGAUUGGCGGUGAAACUCUGCAAGGAAU--------- (((((.((((((....((....)).....)))))))))))...(((((((((.(((.(((.......)))...))).))))....))))).......--------- ( -33.90) >DroSec_CAF1 33880 106 - 1 UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCCAGGAGGGCGCACCACCAGGGAAGCUUGAGCCUCUUGGCUGUGACACUUUGCAAAGGGUGGUGGGCUA (((((.((((((.((.((....)).))..)))))))))))....(((.(((((((.(.((((....((((....))))......)))).)....))))))).))). ( -43.10) >DroEre_CAF1 34249 106 - 1 UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCUGAGAGCGCGCACCACCAGGUAAGCUGGAGCCUCUUGGCGGUAACACUCUGCAAAGGGUGGUGCGACA .((((.((((((.((.((....)).))..))))))))))....(((((((((.((((.....)))).(((....))))))..((((((....))))))))))).). ( -42.00) >DroYak_CAF1 34410 106 - 1 UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCCAGGAGGGCGCACCACCAGGGCAGCUGGAGCCUCUUGGCGGUAACACUUUGCAAGGGGUGUUGCGAUA (((((.((((((.((.((....)).))..)))))))))))......((((((.((((.....)))).(((....))))))((((((((....)))))))))))... ( -39.60) >DroPer_CAF1 40650 97 - 1 UGGAGCAGCUUCAUCAGCAGCAGCAUAAAGAGGUUCUCCAGGAGCGGACACCACCAAGGCAUCUGCAGCCGAUUGGCGGUGAAACUCUGCAAGGAAU--------- (((((.((((((....((....)).....)))))))))))...(((((((((.(((.(((.......)))...))).))))....))))).......--------- ( -33.90) >consensus UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCCAGGAGCGCGCACCACCAGGGAAGCUGGAGCCUCUUGGCGGUGACACUCUGCAAAGGGUGGUG_G_UA (((((.((((((.((.((....)).))..)))))))))))........((((.(((((...((....))..))))).)))).((((((....))))))........ (-26.44 = -26.58 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:22 2006