Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,235,806 – 3,235,913 |
Length | 107 |
Max. P | 0.500000 |
Location | 3,235,806 – 3,235,913 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 87.23 |
Mean single sequence MFE | -39.26 |
Consensus MFE | -31.26 |
Energy contribution | -31.62 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -1.42 |
Structure conservation index | 0.80 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3235806 107 - 20766785 GUCGUUCGCC--UUUUUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU----------CGAUUAAAUUCUGUCUGAGGUCAUCGAGGCACAUGCAGAAAA ..........--.((((((((((((((....((((.(..(((((......)))))..).))))..((----------((((....(((.....)))...)))))))))))))))))))) ( -41.80) >DroSec_CAF1 4977 109 - 1 GUCACUCGCCGCCUGUUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU----------CGAUUAAAUUCAGUCUGAGGUCAUCGAGGCACAUGCAGAAAA ...............((((((((((((....((((.(..(((((......)))))..).))))..((----------((((....(((.....)))...)))))))))))))))))).. ( -40.60) >DroSim_CAF1 8154 109 - 1 GUCACUCGCCGCCUGUUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU----------CGAUUAAAUUCAGUCUGAGGUCAUCGAGGCACAUGCAGAAAA ...............((((((((((((....((((.(..(((((......)))))..).))))..((----------((((....(((.....)))...)))))))))))))))))).. ( -40.60) >DroEre_CAF1 4722 114 - 1 GUCACUCGCC-----UUUUUUGUGUGCGUGCGGGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCUCUUGCGCGUUCAAUUUAAUUCAGUCUGAGGUCAUUCCGGCACAUGCAGAAAA ..........-----.((((((((((((((((((((((.(((((......)))))(....)..))))))))))))..............(((.(((....))).))).)))))))))). ( -33.30) >DroYak_CAF1 4798 114 - 1 GUCACUCGCC-----UUUUUUGUGUGCGUGCGGGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCUCUGGCGCGUUCAAUUAAACUCAGUCUGAGGUCAUCCAGGCACAUGCAGAAAA ..........-----.((((((((((.(..(((((((......)))).)))..)..(((((........)))))...............(((((........))))).)))))))))). ( -40.00) >consensus GUCACUCGCC___U_UUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU__________CGAUUAAAUUCAGUCUGAGGUCAUCGAGGCACAUGCAGAAAA ...............((((((((((((....((((.(..(((((......)))))..).))))..............((((....(((.....)))...))))..)))))))))))).. (-31.26 = -31.62 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:40 2006