Locus 6499

Sequence ID 2R_DroMel_CAF1
Location 20,316,633 – 20,316,723
Length 90
Max. P 0.939387
window10353

overview

Window 3

Location 20,316,633 – 20,316,723
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 94.81
Mean single sequence MFE -32.30
Consensus MFE -28.69
Energy contribution -29.13
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.85
Structure conservation index 0.89
SVM decision value 1.30
SVM RNA-class probability 0.939387
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20316633 90 + 20766785
CAGGGAAUUAAGUUGAGUUCUGGGUUCUGGAUACUGGAUUCUGGAUUCUGGGCACCGAGGUUCCAGUUCUGAGCUCUAAGUUCCCAGUUU
..(((((((.((((.((..(((((..((((...(..((........))..)...)).))..)))))..)).))))...)))))))..... ( -31.70)
>DroSec_CAF1 33376 90 + 1
CAGGGAAUUAAGUUGAGUUCUGGGUUCUGGGUUCUGGAUUCUGUAUUCUGGGCACCGAGGUCCCAGUUCUGAGCUCUAAGUUCCCAGUUC
..(((((((.((((.((..(((((..((.(((((..((........))..)).))).))..)))))..)).))))...)))))))..... ( -38.90)
>DroSim_CAF1 34882 90 + 1
CAGGGAAUUAAGUUGAGUUCUGGGUUCUGGAUUCUGUAUUCUGUAUUCUGGGCACCGAGGUCCCAAUUCUGAGCUCUAAGUUCCCAGUUC
..(((((((.....((((((.((((...((((.....))))...))))((((.((....)))))).....))))))..)))))))..... ( -26.30)
>consensus
CAGGGAAUUAAGUUGAGUUCUGGGUUCUGGAUUCUGGAUUCUGUAUUCUGGGCACCGAGGUCCCAGUUCUGAGCUCUAAGUUCCCAGUUC
..(((((((.((((.((..(((((..((((...(((((........)))))...)).))..)))))..)).))))...)))))))..... (-28.69 = -29.13 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:21 2006