Locus 6496

Sequence ID 2R_DroMel_CAF1
Location 20,300,168 – 20,300,266
Length 98
Max. P 0.588756
window10349

overview

Window 9

Location 20,300,168 – 20,300,266
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 84.83
Mean single sequence MFE -21.44
Consensus MFE -14.20
Energy contribution -14.84
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.66
SVM decision value 0.11
SVM RNA-class probability 0.588756
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20300168 98 + 20766785
UCAAUAUCAAUAUCGCUAUUAUUAACGAUCAUGCUCUGCUGAUCAAGUAUUCAGCGCUGCGCUAGAUUCGACAGAUUGAAUCGAGCUCAAUAGACUCA
...............(((((............((..((((((........))))))..))(((.(((((((....))))))).)))..)))))..... ( -23.60)
>DroSec_CAF1 17161 98 + 1
UCAAUAUCAAUAUCGCUAUUAUUAACGAUCAUGCUCUGCUGAUCAAGUAUUCAGCGCUGCGCUAGAUUCGACAGAUUGAAUCGAACUCAAUAGACUCA
...............(((((............((..((((((........))))))..))....(((((((....)))))))......)))))..... ( -19.60)
>DroSim_CAF1 18083 92 + 1
UC------AAUAUCGCUAUUAUUAACGAUCAUGCUCUGCUGAUCAAGUAUUCAGCGCUGCGCUAGAUUCGACAGAUUGAAUCGAACUCAAUAGACUCA
..------.......(((((............((..((((((........))))))..))....(((((((....)))))))......)))))..... ( -19.60)
>DroEre_CAF1 17384 80 + 1
UCAAU-UUAAUAUAGCUAUAAUUAACGAUUAUGCUCUGCUGAUCAAGUAUUCAGCGCUGCGCUAGAUUCGACAGAUUGA--------------AC---
(((((-(((((.((((.((((((...))))))((..((((((........))))))..)))))).)))....)))))))--------------..--- ( -19.10)
>DroYak_CAF1 17378 87 + 1
--------AAUAUCGCUAUUAUUAACGAGCAUGCUCUGCUGAUCAAGUAUUCAGCGCUGCGCUAGAUUCGACAGAUUGGAGCGAGCUCAAUAGAC---
--------..................((((.(((((((((((........))))).(((((.......)).)))...)))))).)))).......--- ( -25.30)
>consensus
UCAAU_U_AAUAUCGCUAUUAUUAACGAUCAUGCUCUGCUGAUCAAGUAUUCAGCGCUGCGCUAGAUUCGACAGAUUGAAUCGAACUCAAUAGACUCA
................................((..((((((........))))))..))....(((((((....)))))))................ (-14.20 = -14.84 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:17 2006