Locus 6495

Sequence ID 2R_DroMel_CAF1
Location 20,297,810 – 20,297,916
Length 106
Max. P 0.659886
window10348

overview

Window 8

Location 20,297,810 – 20,297,916
Length 106
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 91.57
Mean single sequence MFE -33.18
Consensus MFE -29.04
Energy contribution -30.00
Covariance contribution 0.96
Combinations/Pair 1.03
Mean z-score -1.28
Structure conservation index 0.88
SVM decision value 0.27
SVM RNA-class probability 0.659886
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20297810 106 + 20766785
CACACAAACGUGUGCAAACUGCGAAUUGCAGUGGAUACCAUCGCACCACC---UCAGCACCCCCCUGGGUGUGCAUUUGCUCAGAUGUGUACUUGAGUGGGGCAGCGAU
(((((....)))))....((((....(((.((((...)))).)))((((.---(((((((((....))))))((((((....)))))).....))))))).)))).... ( -37.00)
>DroSec_CAF1 14854 106 + 1
CACACAAACGUGUGCAAACUGCGAAAUGCAGUGGAUACCAUCGCACCACC---UCAGCACCCCCCUGGUUGUGCAUUUGCUCAGAUGUGUACUUGAGUGGGGCAGCGAU
(((((....)))))...(((((.....))))).......(((((....((---((.((((((....))..))))....((((((........))))))))))..))))) ( -31.10)
>DroSim_CAF1 15778 106 + 1
CACACAAACGUGUGCGAACUGCGAAAUGCAGUGGAUACCAUCGCACCACC---UCAGCACCCCCCUGGGUGUGCAUUUGCUCAGAUGUGUACUUGAGUGGGGCAGCGAU
.........(((((((((((((.....)))))((...)).))))).))).---...((..(((((((((((..(((((....)))))..))))).)).))))..))... ( -37.50)
>DroEre_CAF1 14985 101 + 1
CACACAAACGUGUGCAAACUGCGAAAUGCAGUGGAUUCCAUCGCACCACC---UCAGCACCCCUCUGUGUGUGCUUUUGCUCAAA----UACUUGAGUG-GGCAGCGAU
((((((...(.((((..(((((.....)))))((...........))...---...)))).)...))))))((((((..(((((.----...)))))..-)).)))).. ( -30.10)
>DroYak_CAF1 15077 104 + 1
CACACAAACGUGUGCAAACUGCGAAAUGCAGUGGAUACCAUCGCACCACCUCCUCAGCACCCCUCCGUGUGUGCUUUUGCCCAAA----UACUUGAGUG-GGCAGCGAU
(((((....)))))...(((((.....))))).......(((((...........(((((.(......).)))))..((((((..----........))-))))))))) ( -30.20)
>consensus
CACACAAACGUGUGCAAACUGCGAAAUGCAGUGGAUACCAUCGCACCACC___UCAGCACCCCCCUGGGUGUGCAUUUGCUCAGAUGUGUACUUGAGUGGGGCAGCGAU
(((((....)))))...(((((.....))))).......(((((............((((((....))))))((.(((((((((........))))))))))).))))) (-29.04 = -30.00 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:16 2006