| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,284,861 – 20,284,969 |
| Length | 108 |
| Max. P | 0.857719 |
| Location | 20,284,861 – 20,284,969 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.60 |
| Mean single sequence MFE | -40.93 |
| Consensus MFE | -21.03 |
| Energy contribution | -22.37 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.857719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20284861 108 - 20766785 UCCAGCAGCA---AGGUGAACCAGCAGAUGCGUGCCUUUGCCCGCAAGAGCAGCGCCUCCGCCCAAAAUAACGCAUUAGC---GGCUGCAUCUUCGGCAGCAACCCCAGCCGGA ....(((((.---.((....)).((.(((((((.....(((.(....).)))(((....)))........))))))).))---.)))))...((((((..........)))))) ( -39.30) >DroSec_CAF1 1671 108 - 1 UCUAGCAGCA---AGGUGAACCAGCAGAUGCGUGCCUUUGCCCGCAAGAGCAGCGCCUCUGCGCAAAAUAACGCAUUAGC---AGCUGCAUCUUCGGCAGCCACCUCAGCCGGA ....(((((.---.((....)).((.(((((((.....(((.(....).)))((((....))))......))))))).))---.)))))...((((((..........)))))) ( -43.90) >DroSim_CAF1 1670 108 - 1 UCUAGCAGCA---AGGUGAACCAGCAGAUGCGUGCCUUUGCCCGCAAGAGCAGCGCCUCUGCGCAAAAUAACGCAUUAGC---AGCUGCAUCUUCGGCAGCCACCUUAGCCGGA ....(((((.---.((....)).((.(((((((.....(((.(....).)))((((....))))......))))))).))---.)))))...((((((..........)))))) ( -43.90) >DroEre_CAF1 1684 111 - 1 UCCAGCAGCA---AGGUGAACCAGCAGAUGCGGGCCUUUGCCCGCAAGAGCAGCGCGUCCGGGCAGAAUGUCGCAUUAGCAGCAGCUGCAUCUUCAUCAGCCACCUCUGGCGGA (((.(((((.---.((....)).((.(((((((...((((((((.....((...))...))))))))...))))))).))....)))))..........((((....))))))) ( -45.60) >DroWil_CAF1 1558 104 - 1 UCCAGCAGCAGGCAGGUGAAUCAACAAAUGCGUGCUAUUGCCAGAAAGAGUAGCUCGGCACCACAACA------AGUUGC---UGCCACAUCCUCAUCGGC-AUCCCAAUCACA ......((((.(((..((......))..))).))))..((((.....(((...)))((((.((.....------...)).---))))...........)))-)........... ( -25.70) >DroYak_CAF1 1665 111 - 1 UCCAGCAGCA---AAGUUAACCAGCAAAUGCGGGCCUUUGCCCGCAAGAGCAGCGCCUCCGGGCAGAACGUCGCAUUAGCGGCAGCUGCAUCUUCAUCAGCCAGCUCUGCCGGA (((.((((..---.((((.....((...(((((((....)))))))(((((((((((....))).....(((((....))))).))))).)))......)).)))))))).))) ( -47.20) >consensus UCCAGCAGCA___AGGUGAACCAGCAGAUGCGUGCCUUUGCCCGCAAGAGCAGCGCCUCCGCGCAAAAUAACGCAUUAGC___AGCUGCAUCUUCAGCAGCCACCUCAGCCGGA ....(((((.....((....)).((.(((((((((...(((.(....).)))))((......))......))))))).))....)))))......................... (-21.03 = -22.37 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:15 2006