| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,280,048 – 20,280,152 |
| Length | 104 |
| Max. P | 0.768761 |
| Location | 20,280,048 – 20,280,152 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -34.72 |
| Consensus MFE | -23.27 |
| Energy contribution | -23.92 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20280048 104 - 20766785 ----GUCGUCUGAAGGUCCGAUCAAUGGUCACACAGCUGCUGGAGACGCAGCGACAGAUGACCGACGCUUUGCUCAUUUGUCGGGCUGCCAUGGAGAACCAAAACGCG ----(.(((.((..((((((((.....))).....(((((.(....))))))(((((((((.(((....))).))))))))))))))..))(((....)))..)))). ( -36.20) >DroVir_CAF1 4312 108 - 1 UUUAAUUUAUUUUAGGUGCGUUCCAUGGUCACACAGCUGAUGGAAACGCAGCGCCAAAUGACCGAUGCGCUGCUCAUUUGUCGCGCCGCCAUGGAGAAUCAAAAUGCU .......((((((.(((...(((((((((......((.((..((...(((((((............)))))))...))..))))...))))))))).))))))))).. ( -34.60) >DroPse_CAF1 3964 104 - 1 ----CUCAUCAAAAGGUGCGUUCUAUGGUCACUCAAUUGAUGGAGACCCAGCGCCAGAUGACCGAUGCACUGCUCAUCUGUCGCGCCGCCAUGGAGACCCAGAACGCG ----.............(((((((..((((.(((........)))..((((((((((((((.((......)).)))))))..)))).....))).)))).))))))). ( -35.50) >DroWil_CAF1 3471 104 - 1 ----GACAAAUUUAGGUGCGCUCCAUGGUCACUCAAUUGAUGGAGACUCAGCGACAAAUGACCGAUGCCCUGUUGAUUUGUCGCGCUGCCAUGGAAAAUUCAAAUGCU ----.....((((..((....((((((((..(.....(((.(....))))((((((((((((.(.....).))).))))))))))..))))))))..))..))))... ( -30.20) >DroMoj_CAF1 4349 108 - 1 UAUUGUUGAUUUUAGGUGCGCUCGAUGGUCACCCAGCUGAUGGAAACGCAGCGACAGAUGACGGAUGCAUUGCUAAUUUGUCGCGCUGCCAUGGAGAAUCAAAAUGCU .....((((((((.(((((((....(((....)))((((.((....))))))(((((((...((........)).))))))))))).)))....))))))))...... ( -33.30) >DroPer_CAF1 3946 104 - 1 ----CUCAUCGAAAGGUGCGUUCUAUGGUCACUCAAUUAAUGGAGACCCAGCGCCAGAUGACCGAUGCGCUGCUCAUCUGUCGCGCCGCCAUGGAGACCCAGAACGCG ----...(((....)))(((((((..((((.(((........)))..((((((((((((((.((......)).)))))))..)))).....))).)))).))))))). ( -38.50) >consensus ____GUCAACUUAAGGUGCGUUCCAUGGUCACUCAACUGAUGGAGACGCAGCGACAGAUGACCGAUGCACUGCUCAUUUGUCGCGCCGCCAUGGAGAACCAAAACGCG ..............(((...(((((((((............(....)...(((.(((((((.((......)).))))))).)))...))))))))).)))........ (-23.27 = -23.92 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:13 2006