Locus 6491

Sequence ID 2R_DroMel_CAF1
Location 20,278,238 – 20,278,329
Length 91
Max. P 0.964596
window10344

overview

Window 4

Location 20,278,238 – 20,278,329
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 92.74
Mean single sequence MFE -24.38
Consensus MFE -22.08
Energy contribution -22.16
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -1.58
Structure conservation index 0.91
SVM decision value 1.57
SVM RNA-class probability 0.964596
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20278238 91 - 20766785
GCGAAAGUUCGACUUUUACGGGCGGUCCGCCUCCGGAUCCGGACUGCCUAUUACUAUUUACCGAAACCCUUUUCCACUCAGCUUCUAGAGC
(..((((.....))))..)((((((((((((...))...))))))))))...........................(((........))). ( -21.60)
>DroSec_CAF1 1961 91 - 1
GCGAAAGUUCGACUUUUACGGGCGGUCCGCCCCCGGAUCCGGACUGCCCACUACUAUUUACCGAAACCCUUUUCCACUCAGCUUCUAGAUU
(((((((.....)))))..((((((((((.(....)...))))))))))...............................))......... ( -24.30)
>DroSim_CAF1 1955 91 - 1
GCGAAAGUUCGACUUUUACGGGCGGUCCGCCCCCGGAUCCGGACUGCCCACUACUAUUUACCGCAACCCUUUUCCACUCAGCUUCUAGAGC
(((((((.....))))...((((((((((.(....)...))))))))))............)))............(((........))). ( -26.20)
>DroEre_CAF1 1942 90 - 1
GCGAAAGUUCGACUUUUACGGGCGGUCCGCCUCCGGAUCCGGACUGCCCACUACUAUUUACCGAAACCC-UCUACACUCAGCUUUUAGAGC
(..((((.....))))..)((((((((((((...))...))))))))))...................(-((((...........))))). ( -25.20)
>DroYak_CAF1 1950 89 - 1
GUCAAAGUUCGACUCUAACGGGCGGUCCGCCUCCGGAUCCGGACUGCCCACUACUAUUUACCGAAACC--UUUCCACUCAGCUUUUAGAGC
............((((((.((((((((((((...))...)))))))))).............(((...--.)))..........)))))). ( -24.60)
>consensus
GCGAAAGUUCGACUUUUACGGGCGGUCCGCCUCCGGAUCCGGACUGCCCACUACUAUUUACCGAAACCCUUUUCCACUCAGCUUCUAGAGC
(((((((.....)))))..((((((((((((...))...))))))))))...............................))......... (-22.08 = -22.16 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:12 2006