Locus 6490

Sequence ID 2R_DroMel_CAF1
Location 20,264,251 – 20,264,353
Length 102
Max. P 0.870128
window10343

overview

Window 3

Location 20,264,251 – 20,264,353
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 94.80
Mean single sequence MFE -20.16
Consensus MFE -16.98
Energy contribution -18.22
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -1.63
Structure conservation index 0.84
SVM decision value 0.87
SVM RNA-class probability 0.870128
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20264251 102 - 20766785
GACAACGAAUCGAAAGAAUCAUAUGCAGUUGUGCCAGAAUUUUUUGGUUGUGGAAAAGUUACAAUCAGAUAGAUUAAUGUACAAUUCAAAGUAAUCGUAAUU
....((((.((....))......((.((((((((...((((((((((((((((.....))))))))))).)))))...))))))))))......)))).... ( -25.80)
>DroSec_CAF1 5372 102 - 1
GACAACAAAUCGAAAGAAUCAUAUGCAGCUGUGCCAGAAUUUUAUGUUUGUGGAAAAGUUACAAUCAGAUAGAUUAAUGUACAAUUCAAAGUAAACGUAAGU
.((......((....))............(((((...(((((..((.((((((.....)))))).))...)))))...))))).......))..((....)) ( -14.40)
>DroSim_CAF1 12207 102 - 1
GACAACGAAUCGAAAGAAUCAUAUGCAGUUGUGCCAGAAUUUUAUGUUUGUGGAAAAGUUACAAUCAGAUAGAUUAAUGUACAAUUCAAAGUAAUCGUAAGU
....((((.((....))......((.((((((((...(((((..((.((((((.....)))))).))...)))))...))))))))))......)))).... ( -21.00)
>DroEre_CAF1 12225 102 - 1
GACAACGAAUCGAAAGAAUCAUAUGCAGUUGUGCCAGAAAUUUAUGGUUGUGGAAAAGUUACAAUCAGAUAGAUUAAUGUAGAAUUCAAAGUAAUUGUAAUU
.((((.((.((....)).))...((.((((.(((.(..(((((((((((((((.....)))))))))..))))))..)))).))))))......)))).... ( -18.90)
>DroYak_CAF1 5370 102 - 1
GACAACGAAUCGAAAGAAUCAUAUGCAGUUGUGCCAGAAUUUUAUGGUUGUGGAAAAGUUACAAUCGUAUAGAUUAAUGUAGAAUUCAAAGUAAUGGUAAUU
.((...((.((....)).))...((.((((.(((...((((((((((((((((.....))))))))))).)))))...))).))))))..)).......... ( -20.70)
>consensus
GACAACGAAUCGAAAGAAUCAUAUGCAGUUGUGCCAGAAUUUUAUGGUUGUGGAAAAGUUACAAUCAGAUAGAUUAAUGUACAAUUCAAAGUAAUCGUAAUU
.((...((.((....)).))...((.((((((((...(((((..(((((((((.....)))))))))...)))))...))))))))))..)).......... (-16.98 = -18.22 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:11 2006