Locus 6489

Sequence ID 2R_DroMel_CAF1
Location 20,263,052 – 20,263,145
Length 93
Max. P 0.682034
window10342

overview

Window 2

Location 20,263,052 – 20,263,145
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 86.10
Mean single sequence MFE -39.28
Consensus MFE -32.08
Energy contribution -32.55
Covariance contribution 0.47
Combinations/Pair 1.16
Mean z-score -1.95
Structure conservation index 0.82
SVM decision value 0.31
SVM RNA-class probability 0.682034
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20263052 93 - 20766785
ACGAUAGCGAGCUUUCCGAGGAGGAAGAGCUGGACGAAGAGCUCACGUGGCCAUUGGUCUUG---GACUCGGCGGUUAGUUCGCUCACAUCUGGGG
..(((((((((((..(((..(((...(((((........))))).((.((((...)))).))---..)))..)))..))))))))...)))..... ( -34.30)
>DroSec_CAF1 4188 93 - 1
ACGAGAGCGAGCUUUCCGAGGAGGAAGAGCUGGACGAAGAGCUCACGUGGCCAUUGGUCUUG---GGCUCGGCGGUUGGUUCGCUCGCAUCUGGGG
.(.(((((((((.((((.....))))((((..(.((..(((((((...((((...)))).))---)))))..)).)..)))))))))).))).).. ( -45.10)
>DroSim_CAF1 10973 93 - 1
ACGAGAGCGAGCUUUCCGAGGAGGAAGAGCUGGACGAAGAGCUCACGUGGCCAUUGGUCUUG---GGCUCGGCGGUUGGUUCGCUCGCAUCUGGGG
.(.(((((((((.((((.....))))((((..(.((..(((((((...((((...)))).))---)))))..)).)..)))))))))).))).).. ( -45.10)
>DroEre_CAF1 11030 93 - 1
ACGAGAGCGAGCUUUCCGAGGACGAAGAGCUGGACGAAGAGCUCACAUGGCCAUUGGUCUUG---GGCUCGGCGGUUGGUUCGCUCACGUCUGGGG
(((.(((((((((..(((.(..((......))..)...(((((((...((((...)))).))---)))))..)))..))))))))).)))...... ( -39.20)
>DroYak_CAF1 4146 93 - 1
ACGAGAGCGAGCUUUCCGAGGAGGAAGAGCUGGACGAAGAGCUCACAUGGCCAUUGGUCUUG---GGCUCGGCGGUUGGUUCGCUUACAUCUGGGG
.(.((((..(((.((((.....))))((((..(.((..(((((((...((((...)))).))---)))))..)).)..)))))))..).))).).. ( -37.80)
>DroPer_CAF1 20244 96 - 1
ACGAGAGCGAGCUCUCCGACGAAGCCGAGCUAGAGGAGGGGCUCACAUGGCCAUUGGUCCGAACCACAUCAGCGGUGGGCAGACUCUCGGGUAGUA
.(((((((..((((.(((..((.((((((((........)))))....)))...((((....))))..))..))).)))).).))))))....... ( -34.20)
>consensus
ACGAGAGCGAGCUUUCCGAGGAGGAAGAGCUGGACGAAGAGCUCACAUGGCCAUUGGUCUUG___GGCUCGGCGGUUGGUUCGCUCACAUCUGGGG
..(.(((((((((..(((..(((...(((((........)))))....((((...))))........)))..)))..))))))))).)........ (-32.08 = -32.55 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:10 2006