| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,256,291 – 20,256,382 |
| Length | 91 |
| Max. P | 0.870330 |
| Location | 20,256,291 – 20,256,382 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 73.74 |
| Mean single sequence MFE | -27.33 |
| Consensus MFE | -16.50 |
| Energy contribution | -16.31 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20256291 91 + 20766785 UAAACGUAU--GUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUCUGCUCGUCUGCUGUCAAGCGAUUUGCCCUUGCCCGAA-AA ....(((..--.((((((((((..(((((((..((((.........))))..)).))))))))))))))).))).................-.. ( -29.20) >DroSim_CAF1 4210 83 + 1 CAAACGUAU--GUGACAUCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUC--------UGCUGUCAAGCGAUUUGCCCUUGCCCGAA-AA (((((((..--.(((((.((((.((.(((((.((((....)))).)))))))))--------)).))))).))).))))............-.. ( -23.70) >DroEre_CAF1 4233 83 + 1 CAAGCGUAU--GUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUC--------UGCUGUCAAGCGAUUUGCCCUUGCCCGAA-AA (((((((..--.((((((((((.((.(((((.((((....)))).)))))))))--------)))))))).))).))))............-.. ( -30.30) >DroAna_CAF1 2767 88 + 1 CGAAUGUAAAUUUAUUCGCCGCUCU-GCUGGAAAGUGCAAAUUUUUCAACGGACU-----UCGGAAGUCAAGCGGUUCGACCCUGUCGGGAGGG .(((((......)))))((((((((-(.((((((((....)))))))).))))(.-----...).......)))))....((((......)))) ( -26.10) >consensus CAAACGUAU__GUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUC________UGCUGUCAAGCGAUUUGCCCUUGCCCGAA_AA (((((((.....((((((((((.((.(((((.((((....)))).))))))).).......))))))))).))).))))............... (-16.50 = -16.31 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:09 2006