Locus 6487

Sequence ID 2R_DroMel_CAF1
Location 20,248,884 – 20,249,004
Length 120
Max. P 0.706222
window10340

overview

Window 0

Location 20,248,884 – 20,249,004
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.46
Mean single sequence MFE -30.36
Consensus MFE -24.05
Energy contribution -24.05
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.79
SVM decision value 0.36
SVM RNA-class probability 0.706222
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20248884 120 + 20766785
AAAGCAGGAAAAUGGGCCACAAAAGGCGUAAGACGAGGCAAACUCGUUUGCCAUAAUUAUUGCUUUUGUUGGUAGCUAUCGUCCUUCCUCACGCACCAGCAACACCCCAACCCCCAACCC
(((((((....(((((((......)))...(((((((.....))))))).)))).....)))))))(((((((.((................)))))))))................... ( -31.99)
>DroPse_CAF1 34223 104 + 1
AAAGCAGGAAAAUGGGCGACAAAAGGCGUAAGACGAGGCAAACUCGUUUGCCAUAAUUAUUGCUUUUGUUGGUAGCUACCGUCCUUCCUAC-----CCGUCGCC-----------CUUCC
......((((...(((((((.((((((((((.....((((((....))))))....))).)))))))...(((((............))))-----).))))))-----------))))) ( -34.80)
>DroSim_CAF1 33322 108 + 1
AAAGCAGGAAAAUGGGCCACAAAAGGCGUAAGACGAGGCAAACUCGUUUGCCAUAAUUAUUGCUUUUGUUGGUAGAUAUCGUCCUUCCUCACGCACCAGCUACACCCC------------
...(((((((..((.(((......))).)).(((((((((((....)))))).......(((((......)))))...))))).)))))...))..............------------ ( -28.50)
>DroEre_CAF1 35395 103 + 1
AAAGCAGGAAAAUGGGCCACAAAAGGCGUAAGACGAGGCA-ACUCGUUUGCCAUAAUUAUUGCUUUUGUUGGUAGCUAUCGUCCUUCCUCACGCACCACGCCCA----------------
(((((((....(((((((......)))...(((((((...-.))))))).)))).....)))))))...((((.((................))))))......---------------- ( -28.99)
>DroYak_CAF1 34403 104 + 1
AAAGCAGGAAAAUGGGCCACAAAAGGCGUAAGACGAGGCAAACUCGUUUGCCAUAAUUAUUGCUUUUGUUGGUAGCUAUCGUCCUUCCUCACGCACCCCACCCC----------------
...(((((((..((.(((......))).)).(((((((((((....)))))).......(((((......)))))...))))).)))))...))..........---------------- ( -28.20)
>DroAna_CAF1 33022 103 + 1
AAAGCAGGAAAAUGGGCGACAAAAGGCGAAAGACGAGGCAAACUCGUUUGCCAUAAUUAUUGCUUUUGUUGGUAGCUAUCGUCCUUCCUCAGCAACC----------UAACCG-------
...(((((((...((((((.....(((((...(((((.....)))))))))).......(((((......)))))...)))))))))))..))....----------......------- ( -29.70)
>consensus
AAAGCAGGAAAAUGGGCCACAAAAGGCGUAAGACGAGGCAAACUCGUUUGCCAUAAUUAUUGCUUUUGUUGGUAGCUAUCGUCCUUCCUCACGCACCAGCCACA________________
.....(((((...((((.......((((...((((((.....)))))))))).......(((((......))))).....)))))))))............................... (-24.05 = -24.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:08 2006