| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,246,198 – 20,246,290 |
| Length | 92 |
| Max. P | 0.574071 |
| Location | 20,246,198 – 20,246,290 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.48 |
| Mean single sequence MFE | -20.13 |
| Consensus MFE | -14.67 |
| Energy contribution | -14.92 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20246198 92 - 20766785 -----UCUGAAAGAGUAUCCAGGACUCUUUCUAU--------CGCUGGUAU------UUUAU---CCAGUUGUUGGUAUUAUUUUGUUAUUUGUGCUGGCAUUUUGGAUUUGUU -----...((((((((.......))))))))...--------.........------...((---((((.(((..((((.............))))..)))..))))))..... ( -22.52) >DroSec_CAF1 31483 92 - 1 -----UUUGAAAGAGUAUCCAGGACUCCUUCUAU--------CGCUGGCAU------UUUCC---CCAGUUGUUGGUAUUAUUUUGUUAUUUGUGCUGGCAUUUUGGAUUUGUU -----...........((((((((..........--------.(((((...------.....---)))))(((..((((.............))))..)))))))))))..... ( -19.12) >DroSim_CAF1 30674 91 - 1 -----UUUGAAAGAGUAUCCAGGACUCCUUCUAU--------CGCUGGCAU------UUUC----CCAGUUGUUGGUAUUAUUUUGUUAUUUGUGCUGGCAUUUUGGAUUUGUU -----...........((((((((..........--------.(((((...------....----)))))(((..((((.............))))..)))))))))))..... ( -18.82) >DroEre_CAF1 32743 92 - 1 -----UUUGGAAGAGUAUCCAGGACUCUUUCUAU--------GGCUGGCAU------AUUCC---CCAGUUUUUGGUAUUAUUUUGUUAUUUGUGCUGGCAUUUUGGAUUUGUU -----...((((((((.......))))))))...--------.((..((((------(....---.(((..(........)..))).....)))))..)).............. ( -20.40) >DroYak_CAF1 31687 98 - 1 -----UUUGAAAGAGUAUCCAGGACUCUUUCUAU--------CGCUGGCAUACGAGUAUUCC---CUAGUUGUUGGCAUUAUUUUGUUAUUUGUGCUGGCAUUUUGGAUUUGUU -----...((((((((.......))))))))...--------.((..((((((((.((....---.)).))))(((((......)))))...))))..)).............. ( -24.40) >DroAna_CAF1 30083 108 - 1 UUUUCCUCGAAAGAGUAUCCAAUAUUUUAACUAAAAGAUUGAAGCUAAACU------UUUCCCUUCUAGUUGUUGUUAUUAUUUUGUUAUUUGUGCAGGCAUUUUGGUUUUGUU .....(((....)))...((((.((..((((((.(((...((((.....))------))...))).))))))..))......(((((.......)))))....))))....... ( -15.50) >consensus _____UUUGAAAGAGUAUCCAGGACUCUUUCUAU________CGCUGGCAU______UUUCC___CCAGUUGUUGGUAUUAUUUUGUUAUUUGUGCUGGCAUUUUGGAUUUGUU ........((((((((.......))))))))..................................((((.(((..((((.............))))..)))..))))....... (-14.67 = -14.92 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:07 2006