| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,243,788 – 20,243,899 |
| Length | 111 |
| Max. P | 0.686107 |
| Location | 20,243,788 – 20,243,899 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.83 |
| Mean single sequence MFE | -38.30 |
| Consensus MFE | -23.87 |
| Energy contribution | -24.59 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.75 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20243788 111 + 20766785 UACCUAUGCGCUUUACCUAUGUAAAUAGGUAAAUAUGUACUAUAUACGCGGUGGGGGGG-AGG--------GGGGGUUACUCUAUUUAUUCCUCUUCUUAUUUCCCGUAGAGCGCAGCAU ......((((((((((((((....)))))))................((((..((..((-(((--------((((((..........)))))))))))..))..)))).))))))).... ( -39.60) >DroSec_CAF1 29162 106 + 1 UACCUAUGCGCUUUACCUAUGUAAAUAGGUAAAUAUGUACUAUAUACAUGGUGGGGGG--AGG--------GGG----ACUCUAUUUCUUCCUCUUCCUAUUUCCCGUACAGCGCAGCAU ......((((((((((((((....)))))))))..(((((.........(((((((((--(((--------(((----(.......))))))))))))))))....)))))))))).... ( -41.92) >DroSim_CAF1 28359 106 + 1 UACCUAUGCGCUUUACCUAUGUAAAUAGGUAAAUAUGUACUAUAUGCACGGUGGGGGG--AGG--------GGG----ACUCUAUUUCUUCCUCUUCUUAUUUCCCGUAGAGCGCAGCAU ......((((((((((((((....)))))))................(((((((((((--(((--------(((----(.......))))))))))))))....)))).))))))).... ( -38.80) >DroEre_CAF1 30398 102 + 1 UACCUAUGCGCUUUACCUAUGUAAAUAGGUAAAUAUGUACUAUAUACACGGUGGGGGGG--------------G----ACUCUAUUUCUUCCUCUUCUUAUUUCCCGUAGAGCGCAGCAU ......(((((((((((..((((.((((...........)))).))))..).(((((((--------------(----(......)))))))))............)))))))))).... ( -31.70) >DroYak_CAF1 29208 116 + 1 UACCUAUGCGCUUUACCUAUGUAAAUAGGUAAAUAUGUACUAUAUACACGGUGGUGGGGGAGGGGGGCAAGGGG----GCUAUAUUUCUUCCUCUUCUUAUUUCCCGUAGAGCGCAGCAU ......(((((((((((..((((.((((...........)))).))))..)....((((((((((((.(((..(----......)..))).))))))))...)))))))))))))).... ( -39.50) >consensus UACCUAUGCGCUUUACCUAUGUAAAUAGGUAAAUAUGUACUAUAUACACGGUGGGGGGG_AGG________GGG____ACUCUAUUUCUUCCUCUUCUUAUUUCCCGUAGAGCGCAGCAU ......((((((((((((((....))))))))...............(((((((((((..(((........((......)).........))))))))))....))))..)))))).... (-23.87 = -24.59 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:06 2006