Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,235,331 – 20,235,459 |
Length | 128 |
Max. P | 0.988071 |
Location | 20,235,331 – 20,235,421 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -30.24 |
Energy contribution | -30.80 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.90 |
Structure conservation index | 0.87 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20235331 90 + 20766785 GUGGCUCUCUCGCCACCCACACACACUUACGUGCGCUUGCUCUCUCGCCUCUUUGGUCCUGCGAGGCAAGCAAGGCAGCGAGGGAGCGAA ...((((((((((..((....(((......))).((((((.(((.((((.....)))...).)))))))))..))..))))))))))... ( -39.90) >DroSec_CAF1 28169 85 + 1 AUGGCUCUCUCACCACCCACACACACUACCGUGCGCUCGCUCUCUCGCCCAUUUGGUCCUGCGAGGCAAGCAAGGCAGCGAGGGA----- .....((((((.(..((....(((......))).(((.((...(((((((....))....))))))).)))..))..).))))))----- ( -23.30) >DroSim_CAF1 27356 90 + 1 GUGGCUCUCUCGCCACCCACACACACUACCGUGCGCUCGCUCUCUCGCCCAUUUGGUCCUGCGAGGCAGGCAAGGCAGCGAGGGAGCGAA (((((......)))))...(.(((......))).).((((((((((((...((((..(((((...)))))))))...)))))))))))). ( -40.90) >consensus GUGGCUCUCUCGCCACCCACACACACUACCGUGCGCUCGCUCUCUCGCCCAUUUGGUCCUGCGAGGCAAGCAAGGCAGCGAGGGAGCGAA ...((((((((((..((....(((......))).(((.((...(((((((....))....))))))).)))..))..))))))))))... (-30.24 = -30.80 + 0.56)
Location | 20,235,331 – 20,235,421 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -42.73 |
Consensus MFE | -40.67 |
Energy contribution | -41.23 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -2.77 |
Structure conservation index | 0.95 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.988071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20235331 90 - 20766785 UUCGCUCCCUCGCUGCCUUGCUUGCCUCGCAGGACCAAAGAGGCGAGAGAGCAAGCGCACGUAAGUGUGUGUGGGUGGCGAGAGAGCCAC ...((((.(((((..((...((((((((...........))))))))....((.((((((....)))))).))))..))))).))))... ( -47.40) >DroSec_CAF1 28169 85 - 1 -----UCCCUCGCUGCCUUGCUUGCCUCGCAGGACCAAAUGGGCGAGAGAGCGAGCGCACGGUAGUGUGUGUGGGUGGUGAGAGAGCCAU -----((.(((((..((((((((..(((((....((....))))))).))))))((((((....))))))...))..))))).))..... ( -37.60) >DroSim_CAF1 27356 90 - 1 UUCGCUCCCUCGCUGCCUUGCCUGCCUCGCAGGACCAAAUGGGCGAGAGAGCGAGCGCACGGUAGUGUGUGUGGGUGGCGAGAGAGCCAC .((((((.(((((.......(((((...))))).((....))))))).))))))((((((....))))))....(((((......))))) ( -43.20) >consensus UUCGCUCCCUCGCUGCCUUGCUUGCCUCGCAGGACCAAAUGGGCGAGAGAGCGAGCGCACGGUAGUGUGUGUGGGUGGCGAGAGAGCCAC ...((((.(((((..((((((((..(((((............))))).))))))((((((....))))))...))..))))).))))... (-40.67 = -41.23 + 0.56)
Location | 20,235,354 – 20,235,459 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.03 |
Mean single sequence MFE | -47.87 |
Consensus MFE | -37.55 |
Energy contribution | -37.33 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -3.06 |
Structure conservation index | 0.78 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20235354 105 + 20766785 CACUUACGUGCGCUUGCUCUCUCGCCUCUUUGGUCCUGCGAGGCAAGCAAGGCAGCGAGGGAGCGAAGGUACCAAAGGAGCGAGUGAGCCUGUGUGCGUGAGUAG .(((((((..(((..((((.(((((..((((((((((.((..((.......))..)).))))((....)).))))))..))))).))))..)))..))))))).. ( -56.50) >DroSec_CAF1 28192 88 + 1 CACUACCGUGCGCUCGCUCUCUCGCCCAUUUGGUCCUGCGAGGCAAGCAAGGCAGCGAGGGA-----------------GCGAGUGAGCCUGUGUGCGUGAGUAG (((....((.(((((((((((((((((....)).(((((.......)).)))..))))))))-----------------))))))).))..)))(((....))). ( -40.90) >DroSim_CAF1 27379 104 + 1 CACUACCGUGCGCUCGCUCUCUCGCCCAUUUGGUCCUGCGAGGCAGGCAAGGCAGCGAGGGAGCGAAGG-AGCAAAGGAGCGAGUGAGCCUGUGUGCGUGAGUAG .(((..((..(((((((((((((((...((((..(((((...)))))))))...))))))))))))(((-..((..........))..))))))..))..))).. ( -46.20) >consensus CACUACCGUGCGCUCGCUCUCUCGCCCAUUUGGUCCUGCGAGGCAAGCAAGGCAGCGAGGGAGCGAAGG_A_CAAAGGAGCGAGUGAGCCUGUGUGCGUGAGUAG .(((..((..(((..((((.(((((((....))((((.((..((.......))..)).)))).................))))).))))..)))..))..))).. (-37.55 = -37.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:05 2006