| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,234,836 – 20,234,938 |
| Length | 102 |
| Max. P | 0.514843 |
| Location | 20,234,836 – 20,234,938 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.56 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -18.85 |
| Energy contribution | -18.72 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20234836 102 - 20766785 GUAUUACCGUAAUGAAU-UCGAGAGAGC-----------GCGAAAAUAGAGCGCAUUGGGAAACCGAGAGCGUGAGCGCACAAAACAUUUUCGAACAUUACCCCCCAUUUU-UUU ........((((((..(-(((((((.((-----------((.........)))).((((....))))(.((....)).)........))))))))))))))..........-... ( -29.90) >DroSec_CAF1 27686 98 - 1 GCAUUACCGUA---AAU-UCGAGAGAGC-----------GCGCAAAUAGAGCGCAUUGGGAAACCGAGAGCGUGAGCGCACAAAACAUUUUCGAACAUUACCCCCCAUUU--UUU ........(((---(.(-(((((((.((-----------((.(.....).)))).((((....))))(.((....)).)........))))))))..)))).........--... ( -26.60) >DroSim_CAF1 26865 101 - 1 GCAUUACCGUAAUGAAU-UUGAGAGAGC-----------GCGCAAAUAGAGCGCAUUGGGAAACCGAGAGCGUGAGCGCACAAAACAUUUUCGAACAUUACCCCCCAUUU--UUU ........((((((..(-(((((((.((-----------((.(.....).)))).((((....))))(.((....)).)........)))))))))))))).........--... ( -28.00) >DroEre_CAF1 28823 101 - 1 GCAUUACCGUAAUGAAU-UCGGGAGAGC-----------GCGCAAAUAGAGCGCGUUGGGAAACCGAGAGCGUGAGCGCACAAAACGUUUUCGAACAUUAGCCCCCAUUU--UUU .(((((...)))))...-..(((.(.((-----------((((.......))))(((((....))((((((((...........)))))))).)))....))))))....--... ( -30.30) >DroYak_CAF1 27606 109 - 1 GCAUUACCGUAAUGAAUUUCGAGAGAGC----AAA--UAGCGCAAAUAGAGCGCAUUGGGAAACCGAGAGCGUGAGCGCACAAAACGUUUUCGAACAUUAGCCCCCAUUUUUUUU .........(((((...((((((((...----...--..((((.......((((.((((....))))..))))..))))........)))))))))))))............... ( -27.19) >DroAna_CAF1 25771 108 - 1 GCGGUAUCUUGGCGAUU-AGGAGAGGAGGAGCAUAGCCAGAGAAUGUGGAGCGCAUUGGCAAAUCAAGAGCGUGAGCGCACAAAACAUUUUCUAAC------CGUUAUUUUUUUU (((((.....(((....-.................)))(((((((((.(.((((....)).........((....)))).)...))))))))).))------))).......... ( -27.70) >consensus GCAUUACCGUAAUGAAU_UCGAGAGAGC___________GCGCAAAUAGAGCGCAUUGGGAAACCGAGAGCGUGAGCGCACAAAACAUUUUCGAACAUUACCCCCCAUUU__UUU ..................(((((((..............((((.......)))).((((....))))(.((....)).)........)))))))..................... (-18.85 = -18.72 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:02 2006