Locus 6481

Sequence ID 2R_DroMel_CAF1
Location 20,233,090 – 20,233,190
Length 100
Max. P 0.847268
window10331

overview

Window 1

Location 20,233,090 – 20,233,190
Length 100
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 92.94
Mean single sequence MFE -34.88
Consensus MFE -30.85
Energy contribution -32.05
Covariance contribution 1.20
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.88
SVM decision value 0.77
SVM RNA-class probability 0.847268
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20233090 100 - 20766785
------AACAAUAACAAACGGGAGGCCAGCGGCCACAUCCUUGAUGCCCAGACGGCGCAGUUGAUUGGCCACAAGGAUAACACCGUGCCCGCCGUGGCCAGCACCG
------............(((..(((((((((.((((((((((.((.((((.((((...)))).)))).)))))))))......))).))))..)))))....))) ( -36.80)
>DroSec_CAF1 25941 100 - 1
------AACAAUAACAAACGGGAGGCCAGCGGCCACAUCCUUGAUGCCCAGACGGCGCAGUUGAUUGGCCACAAGGAUAACACCGUGCCCGCCGUGGCCAGCACCG
------............(((..(((((((((.((((((((((.((.((((.((((...)))).)))).)))))))))......))).))))..)))))....))) ( -36.80)
>DroSim_CAF1 25126 100 - 1
------AACAAUAACAAACGGGAGGCCAGCGGCCACAUCCUUGAUGCCCAGACGGCGCAGUUGAUUGGCCACAAGGAUAACACCGUGCCCGCCGUGGCCAGCACCG
------............(((..(((((((((.((((((((((.((.((((.((((...)))).)))).)))))))))......))).))))..)))))....))) ( -36.80)
>DroEre_CAF1 27006 100 - 1
------AACAAUAACAAACGGGAGGCCAGCGGCCACAUCCUUGAUGCGCAGACGGCGCAGUUGAUUGGCCACAAGGAUAACACCGUGCCCGCCUUGGGCAGCACCG
------...........((((..((((...))))..(((((((.(((((.....)))))(((....)))..)))))))....))))((((.....))))....... ( -35.20)
>DroYak_CAF1 25766 100 - 1
------AACAAUAACAAACGGGAGGCCAGCGGCCACAUCCUUGAUGCCCAGACGGCGCAGUUGAUUGGCCACAAGGAUAACACCGCGCCCGCCUCGGCCAGCACCG
------............((((((((..((((....(((((((.((.((((.((((...)))).)))).)))))))))....))))....))))).(....).))) ( -34.60)
>DroAna_CAF1 23746 106 - 1
AAUAGUAACAAUAACAAACGAGAGGCCAGCGACCACAUCCUUGAUGCCCAGACGGCCCAGCUGAUUGGUCACCAGGAUAACAGCUUGUCCGCCGUGGCCACCACCG
.......................((((((((((((.(((.(((..(((.....))).)))..))))))))....((((((....))))))))..)))))....... ( -29.10)
>consensus
______AACAAUAACAAACGGGAGGCCAGCGGCCACAUCCUUGAUGCCCAGACGGCGCAGUUGAUUGGCCACAAGGAUAACACCGUGCCCGCCGUGGCCAGCACCG
..................(((..(((((((((.((((((((((.((.((((.((((...)))).)))).)))))))))......))).))))..)))))....))) (-30.85 = -32.05 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:59 2006