Locus 6480

Sequence ID 2R_DroMel_CAF1
Location 20,232,928 – 20,233,019
Length 91
Max. P 0.861314
window10330

overview

Window 0

Location 20,232,928 – 20,233,019
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -32.08
Consensus MFE -24.73
Energy contribution -25.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.77
SVM decision value 0.83
SVM RNA-class probability 0.861314
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20232928 91 - 20766785
ACUGCGACUUCAUUAACACGCCUUAAUCCUUGGAUAUCAGCCUGUGAUCUGGCACAGCCGGGCACAGGAACCGACUUGCAGGUGAGUUUGA-----------------------------
.((((((..((..............(((....))).....((((((.((((((...))))))))))))....)).))))))..........----------------------------- ( -27.30)
>DroPse_CAF1 25768 120 - 1
ACUGCGUCCUCAUUAACACGCCUUAAUCCUUGGAUAUCAGCCUGUGAUCUGGCACAGCCGGGCACAGGCACCGACUUGCAGGUGAGUCCCCACACCCCCAAGGACACUCUGUGAACUUUA
...((((..........)))).....(((((((......(((((((.((((((...)))))))))))))...((((((....)))))).........)))))))(((...)))....... ( -40.30)
>DroSim_CAF1 24964 91 - 1
ACUGCGACUUCGUUAACACGCCUUAAUCCUUGGAUAUCAGCCUGUGAUCUGGCACAGCCGGGCACAGGAACCGACUUGCAGGUAAGUUUGC-----------------------------
.((((((.((.(((...........(((....))).....((((((.((((((...))))))))))))))).)).))))))..........----------------------------- ( -28.80)
>DroYak_CAF1 25604 91 - 1
ACUGCGACUUCGCUAACACGCCUUAAUCCUUGGAUAUCAGCCUGUGAUCUGGCACAGCCGGGCACAGGAACCGACUUGCAGGUGAGUUUGC-----------------------------
...(((....))).(((.(((((..(((....))).....((((((.((((((...))))))))))))...........))))).)))...----------------------------- ( -29.70)
>DroAna_CAF1 23580 89 - 1
ACUGCUAGCUCGUUAACACGCCUUAAUCCUUGGAUAUCAGCCUGUGAUCUGGCACAGCCGGGCACAGCAACCGACUUGCAGGUGAGUCU-------------------------------
.((((.((.(((.......((....(((....)))....))(((((.((((((...)))))))))))....))))).))))........------------------------------- ( -26.10)
>DroPer_CAF1 25999 120 - 1
ACUGCGUCCUCAUUAACACGCCUUAAUCCUUGGAUAUCAGCCUGUGAUCUGGCACAGCCGGGCACAGGCACCGACUUGCAGGUGAGUCCCCACACCCCCAAGGACACUCUGUGAACUUUA
...((((..........)))).....(((((((......(((((((.((((((...)))))))))))))...((((((....)))))).........)))))))(((...)))....... ( -40.30)
>consensus
ACUGCGACCUCAUUAACACGCCUUAAUCCUUGGAUAUCAGCCUGUGAUCUGGCACAGCCGGGCACAGGAACCGACUUGCAGGUGAGUCUGC_____________________________
.(((((...((..............(((....))).....((((((.((((((...))))))))))))....))..)))))....................................... (-24.73 = -25.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:58 2006