Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,232,659 – 3,232,753 |
Length | 94 |
Max. P | 0.769370 |
Location | 3,232,659 – 3,232,753 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -26.36 |
Consensus MFE | -17.32 |
Energy contribution | -18.36 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.99 |
Structure conservation index | 0.66 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3232659 94 - 20766785 --AG-CCGUGUUAAUCACAUCCACUAAGUCUAAGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGC------AGGCUGAGGCAUUCAAUUAGCCAGC --.(-(((((.....)))....(((((.....((((((......))))))....)))))........)))((------.((((((.........)))))).)) ( -23.60) >DroSec_CAF1 1906 77 - 1 --------------UCACAGCCACUA------AGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGG------AGGCUGAGGCAUUCAAUUAGCCAGU --------------...(((((....------((((((......))))))........(((((.....))))------)))))).(((.........)))... ( -25.30) >DroSim_CAF1 5115 88 - 1 --AG-CCGAGUUAAUCACAGCCACUA------AGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGG------AGGCUGAGGCAUUCAAUUAGCCAGU --((-((((((((((..((((.....------.....))))..)))))))).......(((((.....))))------)))))..(((.........)))... ( -31.20) >DroEre_CAF1 1686 96 - 1 UCAGCCCGAUUAAUUCACAGC-AUUA------AGUCAGCUGAAAUUGACUCAUGUUAGUCCCCAUUUGGCGGAGGCGGAGGCUGAGGCAUUCAAUUAGCCAGC (((((((((((((((..((((-....------.....)))).)))))).)).((((..(((((....)).)))))))).))))))(((.........)))... ( -26.50) >DroYak_CAF1 1693 90 - 1 UAAGCCCGAUUUAAUCACAGC-ACUA------AGUCAGCUGAAAUUGACUCAUAUUUGUCCGCAUUUGGCGG------AGGCUGAGGCAUUCAAUAAGCCAGA ..((((.((.(((((..((((-....------.....))))..))))).)).......(((((.....))))------)))))..(((.........)))... ( -25.20) >consensus __AG_CCGAGUUAAUCACAGCCACUA______AGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGG______AGGCUGAGGCAUUCAAUUAGCCAGC .................(((((((((......((((((......)))))).....))))((((.....)))).......))))).(((.........)))... (-17.32 = -18.36 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:38 2006