Locus 6479

Sequence ID 2R_DroMel_CAF1
Location 20,231,348 – 20,231,458
Length 110
Max. P 0.661296
window10329

overview

Window 9

Location 20,231,348 – 20,231,458
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.09
Mean single sequence MFE -21.19
Consensus MFE -9.56
Energy contribution -11.52
Covariance contribution 1.96
Combinations/Pair 1.14
Mean z-score -1.80
Structure conservation index 0.45
SVM decision value 0.27
SVM RNA-class probability 0.661296
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20231348 110 + 20766785
--CUGAAUUCAA------AGUCUACAACACAUUUCUCCAAUU--GAGGAGACGAAAUAUUACUUAUAGAAGGACUAUUUUCGAUUUCGUCCUUCUCAAAGUGACCUAAUUUCCAGAGAUC
--(((.......------...............(((((....--..))))).(((((.((((((..((((((((.............))))))))..))))))....))))))))..... ( -24.72)
>DroSec_CAF1 24217 110 + 1
--CUGAAUUCCA------AAUCUACAACACAUUUCUCCAAUU--GAGGAGACAAAAUAUCACUUAUGGAAGGACUAUUUCUGAUUUCGUCCUUCUCGAAGUGACCUACUUUCCAGAGAUU
--..........------(((((..........(((((....--..))))).......((((((..((((((((.............))))))))..))))))............))))) ( -26.42)
>DroSim_CAF1 23052 110 + 1
--CUGAAUUUCA------AAUCUACAACCCAUUUCAACAAUU--GAGAAGACAAAAUAUCACUUAUGGAAGGACUAUUUCUGAUUUCGUCCUUCUCGAAGUGACCUACUUUCCACAGAUU
--(((.......------.............(((((.....)--))))..........((((((..((((((((.............))))))))..))))))...........)))... ( -21.62)
>DroEre_CAF1 25338 101 + 1
AAUCGAAUGCCC------AAUCUCGGAGCAA--UCAAGAGUUUAGUAGAGACAAACUAUCACUU-----------AUUUCUGAUUUCAUCCUUCUCGAAGUGACCUACUUUCCAGAGAUU
............------(((((((((..((--(((..(((..(((.((.........))))).-----------)))..)))))...))).....((((((...))))))...)))))) ( -17.50)
>DroYak_CAF1 24002 118 + 1
AAUCGAAUGCCACACACAUAUAUCGCUCCAA--UCAAAUGUGUAGCAAAGACAAACUAUCACUUGUUAAAGGACUAUUUCUGAUUUCGUCCUUCUUGAACUGACCUACUUUCCAGAGAUU
..((((.(((.(((((...............--.....))))).)))..(((((........))))).((((((.............)))))).)))).(((..........)))..... ( -15.67)
>consensus
__CUGAAUUCCA______AAUCUACAACCCAUUUCAACAAUU__GAGGAGACAAAAUAUCACUUAUGGAAGGACUAUUUCUGAUUUCGUCCUUCUCGAAGUGACCUACUUUCCAGAGAUU
..........................................................((((((..((((((((.............))))))))..))))))................. ( -9.56 = -11.52 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:57 2006