Locus 6478

Sequence ID 2R_DroMel_CAF1
Location 20,230,429 – 20,230,539
Length 110
Max. P 0.696501
window10328

overview

Window 8

Location 20,230,429 – 20,230,539
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 94.55
Mean single sequence MFE -25.90
Consensus MFE -22.64
Energy contribution -23.87
Covariance contribution 1.23
Combinations/Pair 1.12
Mean z-score -2.07
Structure conservation index 0.87
SVM decision value 0.34
SVM RNA-class probability 0.696501
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20230429 110 + 20766785
AACAACGGCAAGCGGCAACUGCUUACAAAAUAAUUGAUUUUGUUCACAUCCUUGACACAAAUAAACAUUCGCUCGGCUCUGCUAGAGUUGAACGCAGCAUAAGUUUGCCA
......(((((((.....((((..(((((((.....)))))))...........................(.(((((((.....))))))).))))).....))))))). ( -29.10)
>DroSec_CAF1 23312 110 + 1
AACAACGGCAAGCGGCAACUGCUUACAAAAUAAUUGAUUUUGUUCAGAUCCUUGACACAAAUAAACAUUCGCUUGACUCUGCUAGAGUUGAACGCAGCUUAAGUUUGCCA
......(((((((.....((((................(((((((((....)))).))))).........(.(..((((.....))))..).))))).....))))))). ( -28.00)
>DroSim_CAF1 22145 105 + 1
AACAACGGCAAGUGGCAACUGCUUACAAAAUAAUUGAUUUUGUUCACAUCCUUGACACAAAUAAACAUUCGC-----UCUGCUAGAGUUGAACGCAGCAUAAGUUUGCCA
......(((((((.....((((..(((((((.....)))))))........................(((((-----((.....))).)))).)))).....))))))). ( -20.60)
>consensus
AACAACGGCAAGCGGCAACUGCUUACAAAAUAAUUGAUUUUGUUCACAUCCUUGACACAAAUAAACAUUCGCU_G_CUCUGCUAGAGUUGAACGCAGCAUAAGUUUGCCA
......(((((((.....((((..(((((((.....)))))))...........................(.(((((((.....))))))).))))).....))))))). (-22.64 = -23.87 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:56 2006