Locus 6476

Sequence ID 2R_DroMel_CAF1
Location 20,230,041 – 20,230,134
Length 93
Max. P 0.991495
window10325

overview

Window 5

Location 20,230,041 – 20,230,134
Length 93
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 94.52
Mean single sequence MFE -23.06
Consensus MFE -20.24
Energy contribution -20.44
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.88
SVM decision value 2.27
SVM RNA-class probability 0.991495
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20230041 93 + 20766785
GCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAU-----AAUUUGCAUAUGGCAUUUCCUGUAAUCAAUUGCAAUCUUUUCAUUCGAUUGAAAAGGCG
((((((((((.(((((((.(((.....(((((..-----..))))).....))).....(((((....)))))....))))))).)))))))..))). ( -23.00)
>DroSec_CAF1 22923 92 + 1
GCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAU-----AAUUUGCAUAUGGCUUUUCCUGUAAUCAAUUGCAAUCUUUUCAUUCGAUUGAA-AGGCG
.(((((((((.(((((((.(((((((.(((((..-----..))))).(((((......))))).)))..))))....))))))).)))))))-))... ( -23.20)
>DroSim_CAF1 21753 92 + 1
GCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAU-----AAUUUGCAUAUGGCAUUUCCUGUAAUCAAUUGCAAUCUUUUCAUUCGAUUGAA-AGGCG
.(((((((((.(((((((.(((.....(((((..-----..))))).....))).....(((((....)))))....))))))).)))))))-))... ( -24.10)
>DroEre_CAF1 23949 97 + 1
GCUUUCAGUGUAAUGAAACUGCAAGAGGCGAAAUAUAGUAAUUUGCAUAUGGCAUUUCC-GUAAUCAAUUGCAAUCUUUUCAUUCGAUUGAAACGGCG
(((((((((..(((((((.(((((..((((((.........))))).(((((.....))-)))..)..)))))....)))))))..))))))..))). ( -22.00)
>DroYak_CAF1 22615 93 + 1
GCUUUCAGUUUAAUGAAACUGCACGAGGCGAAAU-----AAUUUGCAUAUGGCAUUUCCUGUAAUCAAUUGCAAUCUUUUCAUUCGAUUGAAAUGGCG
((((((((((.(((((((.(((.....(((((..-----..))))).....))).....(((((....)))))....))))))).)))))))..))). ( -23.00)
>consensus
GCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAU_____AAUUUGCAUAUGGCAUUUCCUGUAAUCAAUUGCAAUCUUUUCAUUCGAUUGAAAAGGCG
((((((((((.(((((((..((.....(((((.........))))).....)).......((((....)))).....))))))).)))))))..))). (-20.24 = -20.44 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:53 2006