| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,227,312 – 20,227,403 |
| Length | 91 |
| Max. P | 0.962710 |
| Location | 20,227,312 – 20,227,403 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.37 |
| Mean single sequence MFE | -31.04 |
| Consensus MFE | -19.50 |
| Energy contribution | -19.10 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20227312 91 - 20766785 UCUUAGUGUCACCUCUACCGCUC-------ACC-----------GCUC---ACCUC-------UCACCUACCACCCACCGCUACCCAUCAAGGUGAACUGGCGAGGGGUGAGCAUUGGG ..............(((..((((-------(((-----------.(((---.((..-------((((((.....................))))))...)).))).)))))))..))). ( -30.80) >DroSec_CAF1 20278 105 - 1 UCCUAGUGUCACCUCUACCGCUCACCGCUCACC-----------UCUC---ACCCAUCACCUACCACCUACCACCCAUUGCCGCCCAUCAAGGUGAACUGGCGAGGGGCGGGCACUGGG .(((((((((.........((.....)).(.((-----------((((---.((..((((((............................))))))...)).)))))).)))))))))) ( -33.59) >DroSim_CAF1 19138 91 - 1 UCCUAGUGUCACCUCUACCGCUC-------ACC-----------UCUC---ACCCA-------CCACCUACCACCCACCGCCGCCCAUCAAGGUGAACUGGCGAGGGGCGGGCACUGGG .(((((((......)....((((-------.((-----------((((---.((..-------.(((((.....................)))))....)).)))))).)))))))))) ( -28.70) >DroEre_CAF1 21467 101 - 1 UCCUAGUGACACCUC-ACCACUC-------ACCCACCGAACACCGCCCACCACCCA-------CCGCCCAUCGCCCAU---CGCCCAUCAAGGUGAACCGGCGAGGGGCGGGCUUUGGG .....((((....))-)).....-------.((((.((.....))...........-------((((((.(((((..(---((((......)))))...))))).))))))....)))) ( -36.20) >DroYak_CAF1 19917 88 - 1 UCCUGGUGACACCUCUACCGCUU-------ACC-----------ACCC---ACUUA-------CCAUCAACCACCCAC---CGCCCAUCAAGGUGAACCGGCGAGGGGCGGGCACUGGG ...((((((............))-------)))-----------)...---.....-------(((....((.(((..---((((......((....))))))..))).))....))). ( -25.90) >consensus UCCUAGUGUCACCUCUACCGCUC_______ACC___________GCUC___ACCCA_______CCACCUACCACCCAC_GCCGCCCAUCAAGGUGAACUGGCGAGGGGCGGGCACUGGG ....((((..........))))...................................................((((..(((((((.((..((....))...)).)))).)))..)))) (-19.50 = -19.10 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:51 2006