Locus 6472

Sequence ID 2R_DroMel_CAF1
Location 20,223,507 – 20,223,606
Length 99
Max. P 0.993165
window10320

overview

Window 0

Location 20,223,507 – 20,223,606
Length 99
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 95.65
Mean single sequence MFE -21.00
Consensus MFE -21.00
Energy contribution -21.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 1.00
SVM decision value 2.38
SVM RNA-class probability 0.993165
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20223507 99 + 20766785
AAA-------AAAAAACAGGAGCAUUGAGUGCAUAAAGAGCUGAUGUUUUUGUUAUUAAAAUGACCGCACUUCGUUGGAAUUUUCCACAUGCUUGCAUAAAACUCA
...-------.........((((((.((((((...((((((....))))))(((((....))))).)))))).((.(((....)))))))))))............ ( -21.00)
>DroSec_CAF1 16520 98 + 1
AAA-------A-AAAACAGGAGCAUUGAGUGCAUAAAGAGCUGAUGUUUUUGUUAUUAAAAUGACCGCACUUCGUUGGAAUUUUCCACAUGCUUGCAUAAAACUCA
...-------.-.......((((((.((((((...((((((....))))))(((((....))))).)))))).((.(((....)))))))))))............ ( -21.00)
>DroSim_CAF1 15310 98 + 1
AAA-------A-AAAACAGGAGCAUUGAGUGCAUAAAGAGCUGAUGUUUUUGUUAUUAAAAUGACCGCACUUCGUUGGAAUUUUCCACAUGCUUGCAUAAAACUCA
...-------.-.......((((((.((((((...((((((....))))))(((((....))))).)))))).((.(((....)))))))))))............ ( -21.00)
>DroEre_CAF1 17648 95 + 1
----------A-AAAACAGGAGCAUUGAGUGCAUAAAGAGCUGAUGUUUUUGUUAUUAAAAUGACCGCACUUCGUUGGAAUUUUCCACAUGCUUGCAUAAAACUCA
----------.-.......((((((.((((((...((((((....))))))(((((....))))).)))))).((.(((....)))))))))))............ ( -21.00)
>DroYak_CAF1 15849 105 + 1
AAAAACAAAAA-AAAACAGGAGCAUUGAGUGCAUAAAGAGCUGAUGUUUUUGUUAUUAAAAUGACCGCACUUCGUUGGAAUUUUCCACAUGCUUGCAUAAAACUCA
...........-.......((((((.((((((...((((((....))))))(((((....))))).)))))).((.(((....)))))))))))............ ( -21.00)
>consensus
AAA_______A_AAAACAGGAGCAUUGAGUGCAUAAAGAGCUGAUGUUUUUGUUAUUAAAAUGACCGCACUUCGUUGGAAUUUUCCACAUGCUUGCAUAAAACUCA
...................((((((.((((((...((((((....))))))(((((....))))).)))))).((.(((....)))))))))))............ (-21.00 = -21.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:48 2006