Locus 6471

Sequence ID 2R_DroMel_CAF1
Location 20,219,429 – 20,219,541
Length 112
Max. P 0.699264
window10319

overview

Window 9

Location 20,219,429 – 20,219,541
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.57
Mean single sequence MFE -27.60
Consensus MFE -21.20
Energy contribution -20.88
Covariance contribution -0.32
Combinations/Pair 1.06
Mean z-score -1.72
Structure conservation index 0.77
SVM decision value 0.35
SVM RNA-class probability 0.699264
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20219429 112 + 20766785
UAUUGCUCUCUAGUGAAGUUUAAAGUUUCACUUUGCUGGCUCUGGAGGUCAAUGCUUUAUUGUGGCUUUGUGCAUAAUAAAAUAAAUCUUAUGAAUAUGCAUAUG--------CUCAUCU
(((((..((((((.(.(((..((((.....)))))))..).))))))..))))).......(((((..((((((((((((........))))...)))))))).)--------).))).. ( -26.00)
>DroSec_CAF1 12498 112 + 1
UAUUGCUCUCUGGUGAAGUUUAAAGUUUCACUUUGCUGGCUCUGGAGGUCAAUGCUUUAUGGUGGCUUUGUGCAUAAUAAAAUAAAUCUUAUGAAUAUGCAUGUG--------CUCAUCU
(((((..(((..(.(.(((..((((.....)))))))..).)..)))..)))))......((((((..((((((((((((........))))...)))))))).)--------).)))). ( -26.60)
>DroSim_CAF1 10894 112 + 1
UAUUGCUCUCUGGUGAAGUUUAAAGUUUCACUUUGCUGGCUCUGGAGGUCAAUGCUUUAUUGUGGCUUUGUGCAUAAUAAAAUAAAUCUUAUGAAUAUGCAUGUG--------CUCAUCU
(((((..(((..(.(.(((..((((.....)))))))..).)..)))..))))).......(((((..((((((((((((........))))...)))))))).)--------).))).. ( -23.70)
>DroEre_CAF1 13411 119 + 1
UAUUGCUCUCUGGUGAAGUUUAAAGUUUCACUUUGCUGGCUCUGGAGGUCAAUGCUUUAUUGUGGCUUUGUGCAUAAUAAAGC-AAUCUUAUGAAUAUGCAUGUGCUUUCACGCUCAUCU
.((((..(((..(.(.(((..((((.....)))))))..).)..)))..))))(((((((((((.(.....))))))))))))-.......((((...((....)).))))......... ( -29.90)
>DroYak_CAF1 11657 106 + 1
UAUUGCUCUCCGGUGGAGUUUAAAGUUUCACUUUGCUGCCUCUGGAGGUCAAUGCUUUAUUGUGGCUUUGUGCAUAAUAAAGC-UAUCUUAUGAAUAUGCAU-------------CAUCU
.((((..((((((.(((((..((((.....))))))).)).))))))..))))(((((((((((.(.....))))))))))))-..................-------------..... ( -31.80)
>consensus
UAUUGCUCUCUGGUGAAGUUUAAAGUUUCACUUUGCUGGCUCUGGAGGUCAAUGCUUUAUUGUGGCUUUGUGCAUAAUAAAAUAAAUCUUAUGAAUAUGCAUGUG________CUCAUCU
.((((..((((((.(.(((..((((.....)))))))..).))))))..))))(((.......)))...(((((((((((........))))...))))))).................. (-21.20 = -20.88 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:47 2006