Locus 6470

Sequence ID 2R_DroMel_CAF1
Location 20,218,799 – 20,218,891
Length 92
Max. P 0.787102
window10318

overview

Window 8

Location 20,218,799 – 20,218,891
Length 92
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -27.71
Consensus MFE -19.60
Energy contribution -19.30
Covariance contribution -0.30
Combinations/Pair 1.16
Mean z-score -1.82
Structure conservation index 0.71
SVM decision value 0.58
SVM RNA-class probability 0.787102
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20218799 92 - 20766785
UUGC---------UGUUGUCGCCUGGCGACAGCUGACAACGCUGAGCUGUAUUACACUAUAGCCGCGUUUUGUUAGGUCCGCUUUGCACUUCUUUAUCCUC-------------
.(((---------.((((((((...))))))))(((((((((.(.((((((......)))))))))))..)))))..........))).............------------- ( -26.80)
>DroPse_CAF1 11019 114 - 1
CUGCUGCCGCUGCUGUUGUCGACUGGCGACAGCUGACAACACCGAGUUAUAUUACACUACAGCGACGUUUUGUUGGCUCCACUUUCCACUCUUCAAGCCCCAGUCCUUGCUACU
..((((..((((.((((((((.(((....))).)))))))).)((((............((((((....))))))............))))....)))..)))).......... ( -29.55)
>DroSim_CAF1 10278 92 - 1
UUGC---------UGUUGUCGCCUGGCGACAGCUGACAACGCUGAGCUGUAUUACACUAUAGCCGCGUUUUGUUAGGUCCGCUUUGCACUUCUUUAUCCUC-------------
.(((---------.((((((((...))))))))(((((((((.(.((((((......)))))))))))..)))))..........))).............------------- ( -26.80)
>DroEre_CAF1 12763 92 - 1
UUGC---------UGUUGUCGCCUGGCGACAGCUGACAACGCUGAGCUGUAUUACACUAUAGCCGCGUUUUGUGAGGUCCGCUUUGCACUUCUUUAUCCUC-------------
..((---------(((((((....)))))))))....(((((.(.((((((......)))))))))))).((..(((....)))..)).............------------- ( -29.70)
>DroYak_CAF1 10975 92 - 1
UUGC---------UGUUGUCGCCUGGCGACAGCUGACAACGCUGAGCUGUAUUACACUAUAGCCGCGUUUUGUUAGGUCCGCUUUGCACUUCUUUAUCCUC-------------
.(((---------.((((((((...))))))))(((((((((.(.((((((......)))))))))))..)))))..........))).............------------- ( -26.80)
>DroAna_CAF1 9687 98 - 1
UUGCUGCCA---CUGUUGUCGACUGGCGACAGCUGACAACACUGAGCCGUAUUACACUAUGGCUGCGUUUUGUUCAUACCGCUUUUCACUUCCAUAUCCUG-------------
..((...((---.((((((((.(((....))).)))))))).))(((((((......)))))))))...................................------------- ( -26.60)
>consensus
UUGC_________UGUUGUCGCCUGGCGACAGCUGACAACGCUGAGCUGUAUUACACUAUAGCCGCGUUUUGUUAGGUCCGCUUUGCACUUCUUUAUCCUC_____________
..((.........((((((((.(((....))).))))))))....((((((......)))))).))................................................ (-19.60 = -19.30 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:46 2006