Locus 6469

Sequence ID 2R_DroMel_CAF1
Location 20,217,609 – 20,217,723
Length 114
Max. P 0.979450
window10317

overview

Window 7

Location 20,217,609 – 20,217,723
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.44
Mean single sequence MFE -31.36
Consensus MFE -28.10
Energy contribution -28.90
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.90
SVM decision value 1.84
SVM RNA-class probability 0.979450
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20217609 114 - 20766785
------CGCGCCCCCCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAACAGGGCC
------...((((...((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....)))).....)))). ( -31.40)
>DroSec_CAF1 10697 114 - 1
------CGCGCCCCCCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCACACAGGGCC
------...((((...((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....)))).....)))). ( -31.40)
>DroSim_CAF1 9133 114 - 1
------CGCGCCCCCCGCGAAUCUUCGCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCACACAGGGCC
------...((((...((((......((.(((((.....)))))))......(((((((....)))).((((((........))))))...........)))....)))).....)))). ( -31.80)
>DroEre_CAF1 11587 120 - 1
GCCCUCCGCGCCCUGCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAACAGGGCC
((.....))((((((.((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....))))...)))))). ( -36.60)
>DroYak_CAF1 9816 105 - 1
---------------CGCGAAUCCUCUCCAGCUCCGGUUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAAUAGGGCC
---------------.((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....)))).......... ( -25.60)
>consensus
______CGCGCCCCCCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAACAGGGCC
.........((((...((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....)))).....)))). (-28.10 = -28.90 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:45 2006