Locus 6468

Sequence ID 2R_DroMel_CAF1
Location 20,215,356 – 20,215,456
Length 100
Max. P 0.726053
window10316

overview

Window 6

Location 20,215,356 – 20,215,456
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.25
Mean single sequence MFE -28.84
Consensus MFE -17.47
Energy contribution -16.42
Covariance contribution -1.05
Combinations/Pair 1.50
Mean z-score -1.75
Structure conservation index 0.61
SVM decision value 0.41
SVM RNA-class probability 0.726053
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20215356 100 + 20766785
UUUACGUUGCGGCUGAUGUGAAAUGUUUAUGACGGAUAUGUUGGUCGGCAAGUGUUGGAAU---------------UUCUGGCGCAGCAUACAUGCAUAAACAUU-----AAAGCAAACA
.(((((((......)))))))((((((((((.((..((((((((((((.((((......))---------------))))))).)))))))..))))))))))))-----.......... ( -31.40)
>DroPse_CAF1 7097 107 + 1
UUUACGUUGUGGCUGAUGUGGAAUGUUUAUGACGGAUAUGUUGGCUGACAAGUGUUGAAAUUUAUGUACA--------CAGACACUGCAUACAUGCAUACACAUU-----AAGCCAAACA
.....(((.(((((((((((..((((.((((.(((...((((....)))).((((............)))--------).....)))))))...)))).))))))-----.)))))))). ( -28.00)
>DroSim_CAF1 6712 100 + 1
UUUACGUUGCGGCUGAUGUGAAAUGUUUAUGACGGAUAUGUUGGUCGACAAGUGUUGGAAU---------------UUCUGGCGCAGCAUACAUGCAUAAACAUU-----AAAGCAAACA
.(((((((......)))))))((((((((((.((..(((((((.....)..((((..(...---------------..)..))))))))))..))))))))))))-----.......... ( -27.50)
>DroEre_CAF1 9505 120 + 1
UUCACGCUGCGCCCGAUGCGAAAUGUUUAUCACGGAUAUGUCGGUCGACAAGUGUUGGAAUUUAUGUACCCGUCAUUUCUGGCGCAGCACACAUGCAUAACCAUUCACAUAAAGCAAACA
.....((((((((((((.(((.((((((.....)))))).)))))))..(((((.(((...........))).)))))..)))))))).....(((.................))).... ( -30.63)
>DroYak_CAF1 7457 115 + 1
UUUACGCUGCGGCUGAUGUGAAAUGUUUAUGACGGAUAUGUUGGUCGACAAGUGUUGGAAUUUAUGUAGCCGUCAUUUCUGGCGCAGCAUACAUGCAUAAACAUU-----AGGGCAAACA
.....((((((.(.((............(((((((.(((((...(((((....))))).....))))).))))))).)).).)))))).....(((.((.....)-----)..))).... ( -30.52)
>DroAna_CAF1 6687 100 + 1
UUUACGUAGUGUCUGAUGUGAAAUGUUUAUGACGGAUAUGUUGGCCGACAAGUGUCGGAAU---------------UUAUGUUGCUGCAUAUAUGCAUAAGCAUU-----AAAGAGAAUA
.((((((........))))))((((((((((.((.((((((.(.(((((....)))))(((---------------....))).).)))))).))))))))))))-----.......... ( -25.00)
>consensus
UUUACGUUGCGGCUGAUGUGAAAUGUUUAUGACGGAUAUGUUGGUCGACAAGUGUUGGAAU_______________UUCUGGCGCAGCAUACAUGCAUAAACAUU_____AAAGCAAACA
.....(((((((((((((((...(((.....)))..)))))))))((((....)))).........................))))))................................ (-17.47 = -16.42 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:44 2006