Locus 6466

Sequence ID 2R_DroMel_CAF1
Location 20,213,795 – 20,213,893
Length 98
Max. P 0.940036
window10311

overview

Window 1

Location 20,213,795 – 20,213,893
Length 98
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 81.32
Mean single sequence MFE -22.34
Consensus MFE -16.31
Energy contribution -18.62
Covariance contribution 2.31
Combinations/Pair 1.19
Mean z-score -2.94
Structure conservation index 0.73
SVM decision value 1.28
SVM RNA-class probability 0.940036
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20213795 98 + 20766785
CCAUUAAAUGCAAAUUCGAAAUUUAUCUGGUUAUUGUUUCUGCGGAGUAAAUACUUCAAUUAUGUCAAGCAGAAACAAUAACCA-UUCGAAGAAUAUUU--------
..............((((((.......(((((((((((((((((((((....))))).....(....)))))))))))))))))-))))))........-------- ( -29.61)
>DroSec_CAF1 6898 98 + 1
CCAUUAAAUGCAAAUUCAAAAUUUAUCUGGUUAUUGUUUCUGCGGAGUAAAUACUUCAAUUAUGUCAAGCAGAAACAAUAACCA-UUCGAAGAAUAUUU--------
....................((((.(((((((((((((((((((((((....))))).....(....)))))))))))))))))-...)).))))....-------- ( -26.40)
>DroSim_CAF1 5137 98 + 1
CCAUUAAAUGCAAAUUCGAAAUGUAUCUGGUUAUUGUUUCUGCGGAGUAAAUACUUCAAUUAUGUCAAGCAGAAACAAUAACCA-UUCGAAGAAUAUUU--------
..............((((((.......(((((((((((((((((((((....))))).....(....)))))))))))))))))-))))))........-------- ( -29.61)
>DroEre_CAF1 7932 97 + 1
CCAUUAAAUGCAAAUUCGAAAUUUAUCUGCCCAUUGUUUCUGCAGAGUAAAUACUUCAGUUAUGUCA-GUAGAAACAAUAACCA-UUCGAAGAAAAUGC--------
.........(((..((((((.......((...(((((((((((.((((....))))((....))...-)))))))))))...))-)))))).....)))-------- ( -16.41)
>DroYak_CAF1 5854 98 + 1
CCAUUUUAUGCAAAUUCGAAAUUUAUCUGGUUAUUGUUGGCGCAGAGUAAAUACUUCAAUUAUGUCAAGUAGAAACAAUAACCA-UUCGAAGCAAAUUU--------
........(((...((((((.......(((((((((((.((.....((((.........)))).....))...)))))))))))-))))))))).....-------- ( -19.91)
>DroPer_CAF1 5105 95 + 1
CCAUUAAAUGUAAAUGCGAAAUAUCUCUGGUUAUUGUUUCGCCCAAGUGAAUACUUCAAUUAUGUGCAGU---UACGAUGUCUUUUU---------UUUUGUAUCAA
.............((((((((.......((.((((((..(((.((..(((.....)))....)).)).).---.)))))).))....---------))))))))... ( -12.10)
>consensus
CCAUUAAAUGCAAAUUCGAAAUUUAUCUGGUUAUUGUUUCUGCGGAGUAAAUACUUCAAUUAUGUCAAGCAGAAACAAUAACCA_UUCGAAGAAUAUUU________
..............((((((.......((((((((((((((((...((((.........)))).....)))))))))))))))).))))))................ (-16.31 = -18.62 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:40 2006