| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,211,867 – 20,211,962 |
| Length | 95 |
| Max. P | 0.859668 |
| Location | 20,211,867 – 20,211,962 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 81.61 |
| Mean single sequence MFE | -35.02 |
| Consensus MFE | -29.89 |
| Energy contribution | -30.28 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20211867 95 - 20766785 GAGGCGCGAAGGUCACACGUCGAUGGGCAGGCACAAC-CCGGCUUAUUUACUGCCCGAAUGUGUGUCCUGCGUCCCGGGUCCCAUGUCCCGGGUCC ..(((((..(((.(((((((...(((((((.......-............))))))).))))))).))))))))(((((........))))).... ( -41.51) >DroSec_CAF1 5061 74 - 1 GUGGCGCGAAGGUCACACGUCGAUGGGCAGGCACAAC-CCGGCUUAUUUACUGCCCGCAUGUGUGUCCUGCGUCC--------------------- ..(((((..(((.(((((((.(.(((((((.......-............))))))))))))))).)))))))).--------------------- ( -32.61) >DroSim_CAF1 3276 74 - 1 GAGGCGCGAAGGUCACACGUCGAUGGGCAGGCACAAC-CCGGCUUAUUUACUGCCCGCAUGUGUGUCCUGCGUCC--------------------- ..(((((..(((.(((((((.(.(((((((.......-............))))))))))))))).)))))))).--------------------- ( -32.81) >DroEre_CAF1 6094 81 - 1 GAGGCGCGAAGGUCACACGUCGCUGGGCAGGCACAGC-CCGGCUUAUUUACUGCCCGCAUGUGUGUCCUGCGUCCUGCGGCC-------------- .((((((..(((.(((((((.((.((((((....(((-...)))......))))))))))))))).)))))).)))......-------------- ( -36.80) >DroYak_CAF1 3899 88 - 1 GAGGCGCGAAGGUCGCACGUCGAUGGGCAGGCACAAC-CCGGCUUAUUUACUGCCCGCAUGUGUGUCCUGCGUCCUGUGUCC-------CGUGUCC .((((((..(((.(((((((.(.(((((((.......-............))))))))))))))).)))))).)))......-------....... ( -33.01) >DroAna_CAF1 2993 86 - 1 GAAGCGCGAAGGUCACACAUCGAUGGGCAGGCAUAACUCCGGCUUAUUUACUGCCCGCAUGUGUGUCC-GCCUACUGG---------CCUCCUUCU ((((.(.(..((.(((((((.(.(((((((..(((((....).))))...))))))))))))))).))-(((....))---------)).))))). ( -33.40) >consensus GAGGCGCGAAGGUCACACGUCGAUGGGCAGGCACAAC_CCGGCUUAUUUACUGCCCGCAUGUGUGUCCUGCGUCCUG___________________ ..(((((..(((.(((((((.(.(((((((....................))))))))))))))).))))))))...................... (-29.89 = -30.28 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:37 2006