Locus 6462

Sequence ID	2R_DroMel_CAF1
Location	20,210,239 – 20,210,341
Length	102
Max. P	0.540686

overview

Window 5

Location	20,210,239 – 20,210,341
Length	102
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	80.07
Mean single sequence MFE	-28.11
Consensus MFE	-14.18
Energy contribution	-13.84
Covariance contribution	-0.33
Combinations/Pair	1.12
Mean z-score	-2.10
Structure conservation index	0.50
SVM decision value	0.01
SVM RNA-class probability	0.540686
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20210239 102 - 20766785
GCAGGGGAAU----GUAAUGGCAGCGC-AGACACAUUGAUAGCCACAGAAAUGUUGGCAAAUAGCAAAAAUUUCACCUGUA--CC----G-AAUUUCUCUG--CAGGCCUG-CGA---AG
((((((((((----.(((((.......-.....)))))...((((((....)).))))...........))))).((((((--..----(-.....)..))--))))))))-)..---.. ( -28.50)
>DroPse_CAF1 1290 108 - 1
CCAGGCAAAU----GUAAUGGCAGUCCCAUGCACA-UGAUAGCCACAGAAAUGUUGGAAAAUAUCUUAAAUUUUAUCCAAAAGCC----AAAAAAUCUGUA--CAGGCCUG-CAGAACAG
...(((..((----((.((((.....))))..)))-)((((.(((((....)).)))....)))).................)))----......((((((--......))-)))).... ( -24.40)
>DroSec_CAF1 3438 106 - 1
GCAGGCGAAUGUAUGUAAUGGCAGCGC-AGACACAUUGAUAGCCACAGAAAUGUUGGCAAAUAGCAAAAAUUUCACCUGUA--CC----G-AAUUUCUCUG--CAGGCCUG-CGA---AG
((((((((((((.(((....)))..))-)............((((((....)).)))).............)))..(((((--..----(-.....)..))--))))))))-)..---.. ( -29.50)
>DroYak_CAF1 2106 106 - 1
GCAGGCAAAU----GUAAUGGCAGUAC-CGACACAUUGAUAGCCACAGAAAUGUUGGCAAAUAGCAAAAAUUUCACCUGUA--CCGACCG-AAUUUCUCUG--CAGGCCUG-CGA---AG
((((((.(((----((..(((.....)-))..)))))....((((((....)).))))..................(((((--..((...-....))..))--))))))))-)..---.. ( -29.80)
>DroAna_CAF1 1336 108 - 1
GCAGGCAAAU----GUAAUGGCAGUGC-CGACACAUUGAUAGCCACAGAAAUGUUGGCAAAUAGCAAAAAUUUCACCUGAAAACG----GAAAAUUCUCUGGCCAGGCCAGCCGA---AG
...(((.(((----((..((((...))-))..)))))....((((((....)))((((............((((....)))).((----((......)))))))))))..)))..---.. ( -29.20)
>DroPer_CAF1 1269 108 - 1
CCAGGCAAAU----GUAAUGGCAGUCCCAUACACA-UGAUAGCCACAGAAAUGUUGGAAAAUAUCUUAAAUUUUAUCCAAAAGCC----AACAAAUCUGUA--CAGGCCUG-CAGAACAG
.(((((...(----(((.((((.(((.........-.))).))))((((..((((((..........................))----))))..))))))--)).)))))-........ ( -27.27)
>consensus
GCAGGCAAAU____GUAAUGGCAGUGC_AGACACAUUGAUAGCCACAGAAAUGUUGGCAAAUAGCAAAAAUUUCACCUGAA__CC____G_AAAUUCUCUG__CAGGCCUG_CGA___AG
.(((((............((((...................))))..(((((....((.....))....)))))................................)))))......... (-14.18 = -13.84 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:34 2006