Locus 6461

Sequence ID 2R_DroMel_CAF1
Location 20,210,029 – 20,210,120
Length 91
Max. P 0.578766
window10304

overview

Window 4

Location 20,210,029 – 20,210,120
Length 91
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 71.12
Mean single sequence MFE -13.05
Consensus MFE -1.15
Energy contribution -1.91
Covariance contribution 0.76
Combinations/Pair 1.33
Mean z-score -1.59
Structure conservation index 0.09
SVM decision value 0.09
SVM RNA-class probability 0.578766
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20210029 91 - 20766785
---GACCAG------------------AAACAAACAGCAGAAUUCAGAAGCAGCAAGAAAU-----AUGCAAAAAUAUGUUUUCCACCCUCAAACAAAUUGGCUGCCAA-AUGGAAAA
---......------------------...............((((...(((((..(((((-----(((......)))))))).......(((.....))))))))...-.))))... ( -12.60)
>DroSec_CAF1 3221 95 - 1
---GACCAG------------------AAACAAAUAGCAAAAUUCAGCAGCAACAAGGAAUACUAUAUGCAAAAAUAUUUUCUCUACCCUCAAACAAAUUGGCUGCCAA-AUG-AAAA
---......------------------...............(((((((((....(((((....((((......)))).))).)).....(((.....))))))))...-.))-)).. ( -10.70)
>DroSim_CAF1 1438 91 - 1
---GACCAG------------------AAACAAAUAGCAAAAUUCAGCAGCGGCAAGGAAU-----AUGCAAAAAUAUUUUCUCUACCCUCAAACAAAUUGGCUGCCAA-AUGGAAAA
---..(((.------------------.........((........)).(((((..(((((-----((......))))))).........(((.....))))))))...-.))).... ( -13.80)
>DroYak_CAF1 1891 82 - 1
---CAGCUG------------------GAACAAACAGCAAAAUUCAGCAUCAGCAAAGAAU-----AAGCAAAAAUAUUUU---------GAAACAAAUUGGCUGCCAA-AUGAAAAA
---..((((------------------.......))))....((((....((((.......-----...((((.....)))---------)..........))))....-.))))... ( -14.65)
>DroPer_CAF1 997 113 - 1
AACAACCACAACUACAGCAGCAUACAGCGCCAAACAACCAGAAUCGACAUCAGCAAAGUAU-----AAGCCAAAAUAUUUUUCCUACCUGCCAACAAAUUGGCAGCCAAAAUGAAAAA
................((.((.....))))...................(((..(((((((-----........)))))))......(((((((....)))))))......))).... ( -13.50)
>consensus
___GACCAG__________________AAACAAACAGCAAAAUUCAGCAGCAGCAAGGAAU_____AUGCAAAAAUAUUUUCUCUACCCUCAAACAAAUUGGCUGCCAA_AUGAAAAA
..........................................((((...(((((...............................................))))).....))))... ( -1.15 =  -1.91 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:33 2006