Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,229,672 – 3,229,798 |
Length | 126 |
Max. P | 0.633743 |
Location | 3,229,672 – 3,229,764 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 95.76 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -20.89 |
Energy contribution | -20.75 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -0.61 |
Structure conservation index | 1.01 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3229672 92 + 20766785 AAAUCAAUCCCUGAGUGCAUUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCU-------GUCUUUUGGCUCUUC ...((((..((...(((((........)))))........(((((((......))))))).))..))))....((((-------(.....))))).... ( -20.20) >DroSec_CAF1 12368 92 + 1 AAAUCAAUCCCUGAGUGCAUUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCU-------GUCUUUUGGCUCUUC ...((((..((...(((((........)))))........(((((((......))))))).))..))))....((((-------(.....))))).... ( -20.20) >DroSim_CAF1 12837 91 + 1 AAAUCAAUCCCUGAGUGCAUUUUACUUUGCAUGUAAUUGCGUAGUUGCUC-AUUAACUGCUGGUGUUGGCUGUGGCU-------GUCUUUUGGCUCUUC ...((((..((...(((((........)))))........(((((((...-..))))))).))..))))....((((-------(.....))))).... ( -18.60) >DroEre_CAF1 12083 92 + 1 AAAUCAAUCCCUGAGUGCAUUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCU-------GUCUUUUGGCUCUUC ...((((..((...(((((........)))))........(((((((......))))))).))..))))....((((-------(.....))))).... ( -20.20) >DroYak_CAF1 12082 92 + 1 AAAUCAAUCCCUGAGUGCAUUUUACUUUGCAUUUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCU-------GUCUUUUGGCUCUUC ...((((..((((((((((........)))))))).....(((((((......))))))).))..))))....((((-------(.....))))).... ( -23.00) >DroAna_CAF1 15256 99 + 1 AAAUCAAUCCCUGAGUGCAUUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCUUUUUUUUGUCUUUUGGCUCAUC ....(((..((...(((((........)))))........(((((((......))))))).))..)))((((.(((........)))...))))..... ( -22.00) >consensus AAAUCAAUCCCUGAGUGCAUUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCU_______GUCUUUUGGCUCUUC ....(((..((...(((((........)))))........(((((((......))))))).))..)))((((.(((........)))...))))..... (-20.89 = -20.75 + -0.14)
Location | 3,229,691 – 3,229,798 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 90.64 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -23.20 |
Energy contribution | -23.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.83 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3229691 107 + 20766785 UUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCUGUCUUUUGGCUCUUCAACUGUUGGUGCGCAGUGUUGUAAG------UUUGAGUUU ((..((((.(((....((((((((((((......)))))))..(..(..((..(((..(((....)))...)))...))..)..))))))..))))))------)..)).... ( -28.30) >DroSec_CAF1 12387 113 + 1 UUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCUGUCUUUUGGCUCUUCAACUGGUGGUGCGCAGUGUUGUAAGUGUGUGUUUGAGUUU ....((((.(((..((.(((((((((((......)))))))........((((((((..((..((((....))))..))..)).))))))...)))).))..)))..)))).. ( -31.80) >DroEre_CAF1 12102 99 + 1 UUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCUGUCUUUUGGCUCUUCAACUGGUGGUGCGCAGUGG------------UUUGAGU-- ...((((..(((......)))(((((((......))))))).)))).(.((((((((..((..((((....))))..))..)).)))))).)------------.......-- ( -25.40) >DroYak_CAF1 12101 99 + 1 UUUUACUUUGCAUUUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCUGUCUUUUGGCUCUUCAACUGUUGGUGCGCAGUGG------------UUUGAGU-- ....(((.((((......)))).))).......(((((..((((..(..((..(((..(((....)))...)))...))..)..).)))..)------------.))))..-- ( -26.90) >consensus UUUUACUUUGCAUGUAAUUGCGUAGUUGCUAAAUCAACUGCUGGUGUUGGCUGUGGCUGUCUUUUGGCUCUUCAACUGGUGGUGCGCAGUGG____________UUUGAGU__ ...((((..(((......)))(((((((......))))))).))))...(((((((((..(..((((....))))..)..))).))))))....................... (-23.20 = -23.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:34 2006