| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,189,305 – 20,189,395 |
| Length | 90 |
| Max. P | 0.909909 |
| Location | 20,189,305 – 20,189,395 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -32.31 |
| Consensus MFE | -22.48 |
| Energy contribution | -26.40 |
| Covariance contribution | 3.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.909909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20189305 90 + 20766785 -CGAGUGUGUGAGCGGAAUAA---AUUCCGUUGACAUGCGAUUGCGAUGCGCGUUAGCCUGUUGCACAGACACACUCGUGAAUACG------GAACAUUU-------- -(((((((((.(((((((...---.)))))))((((.((...((((...))))...)).))))......)))))))))........------........-------- ( -30.60) >DroPse_CAF1 17963 90 + 1 -CCAACAUAUGAGUGGAAUACAAAUUUUUGUUGACAUGC------GAUGCGCGUGAGCCUGUUGCACAGUCACACACAGCCAUAUA------UCA-----CAUAUAUA -.....(((((.((((.(((........(((((((.(((------((((.((....)).)))))))..)))).)))......))).------)))-----).))))). ( -21.54) >DroSec_CAF1 13058 90 + 1 -CGAGUGUGUGAGCGGAAUAA---AUUCCGUUGACAUGCGAUUGCGAUGCGCGUGAGCCUGUUGCACAGACACACUCGUGAAUACG------GAACAUUU-------- -(((((((((.(((((((...---.)))))))..........(((((((.((....)).)))))))...)))))))))........------........-------- ( -33.10) >DroSim_CAF1 13423 90 + 1 -CGAGUGUGUGAGCGGAAUAA---AUUCCGUUGACAUGCGAUUGCGAUGCGCGUGAGCCUGUUGCACAGACACACUCGUGAAUACG------GAACAUUU-------- -(((((((((.(((((((...---.)))))))..........(((((((.((....)).)))))))...)))))))))........------........-------- ( -33.10) >DroEre_CAF1 13071 96 + 1 -CGAGUGUGUGAGCGGAAUAA---AUUCCGUUGACAUGCGAUUGCGAUGCGCGUGAGCCUGUUGCACAGACACACUCGUGAGUACGGAAACGGAACAUUU-------- -(((((((((.(((((((...---.)))))))..........(((((((.((....)).)))))))...)))))))))...((.((....))..))....-------- ( -37.60) >DroYak_CAF1 13320 91 + 1 GCGAGUGUGUGAGCGGAAUAA---AUUCCGUUGACAUGCGAUUGCGAUGCGCGUGAGCCUGUUGCACCGCCACACUCGUGAAUACG------GAACAUUU-------- ((((((((((.(((((((...---.))))))).))..(((..(((((((.((....)).))))))).))).)))))))).......------........-------- ( -37.90) >consensus _CGAGUGUGUGAGCGGAAUAA___AUUCCGUUGACAUGCGAUUGCGAUGCGCGUGAGCCUGUUGCACAGACACACUCGUGAAUACG______GAACAUUU________ .(((((((((.((((((((.....)))))))).)).......(((((((.((....)).))))))).....))))))).............................. (-22.48 = -26.40 + 3.92)
| Location | 20,189,305 – 20,189,395 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -17.54 |
| Energy contribution | -18.18 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20189305 90 - 20766785 --------AAAUGUUC------CGUAUUCACGAGUGUGUCUGUGCAACAGGCUAACGCGCAUCGCAAUCGCAUGUCAACGGAAU---UUAUUCCGCUCACACACUCG- --------........------........(((((((((..((((.....((....))((...))....)))).....(((((.---...)))))...)))))))))- ( -25.40) >DroPse_CAF1 17963 90 - 1 UAUAUAUG-----UGA------UAUAUGGCUGUGUGUGACUGUGCAACAGGCUCACGCGCAUC------GCAUGUCAACAAAAAUUUGUAUUCCACUCAUAUGUUGG- .(((((((-----(((------(((.(((.((((((((((((.....)))..)))))))))))------).))))))((((....))))........)))))))...- ( -25.40) >DroSec_CAF1 13058 90 - 1 --------AAAUGUUC------CGUAUUCACGAGUGUGUCUGUGCAACAGGCUCACGCGCAUCGCAAUCGCAUGUCAACGGAAU---UUAUUCCGCUCACACACUCG- --------........------........((((((((((((.....)))))....((((((.((....))))))....((((.---...))))))....)))))))- ( -24.30) >DroSim_CAF1 13423 90 - 1 --------AAAUGUUC------CGUAUUCACGAGUGUGUCUGUGCAACAGGCUCACGCGCAUCGCAAUCGCAUGUCAACGGAAU---UUAUUCCGCUCACACACUCG- --------........------........((((((((((((.....)))))....((((((.((....))))))....((((.---...))))))....)))))))- ( -24.30) >DroEre_CAF1 13071 96 - 1 --------AAAUGUUCCGUUUCCGUACUCACGAGUGUGUCUGUGCAACAGGCUCACGCGCAUCGCAAUCGCAUGUCAACGGAAU---UUAUUCCGCUCACACACUCG- --------....((((((((..(((.....((.(((.(((((.....))))).))).))....((....)))))..))))))))---....................- ( -24.90) >DroYak_CAF1 13320 91 - 1 --------AAAUGUUC------CGUAUUCACGAGUGUGGCGGUGCAACAGGCUCACGCGCAUCGCAAUCGCAUGUCAACGGAAU---UUAUUCCGCUCACACACUCGC --------........------........(((((((((((((((.....((....))))))))).............(((((.---...)))))....)))))))). ( -29.30) >consensus ________AAAUGUUC______CGUAUUCACGAGUGUGUCUGUGCAACAGGCUCACGCGCAUCGCAAUCGCAUGUCAACGGAAU___UUAUUCCGCUCACACACUCG_ ..............................((((((((...((((.....((....))((...))....)))).....((((((.....))))))....)))))))). (-17.54 = -18.18 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:28 2006