| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,166,857 – 20,166,954 |
| Length | 97 |
| Max. P | 0.741500 |
| Location | 20,166,857 – 20,166,954 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.87 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -16.46 |
| Energy contribution | -17.10 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20166857 97 + 20766785 UUUUCCAGGAGAAGGAAA------------CAUUUUUCUCCUGCGCCGUGUAGUUUGGCAUAUCAUUUCGGCGCCAAUUUGAAAAUCGUUGAUAUGCAUGCGA----GGCAGG---- .....(((((((((((..------------..))))))))))).(((.((((.....((((((((((((((.......)))))).....)))))))).)))).----)))...---- ( -32.00) >DroPse_CAF1 47419 94 + 1 ---------AAAGGU--GAAUUCCGGG----GCUCUCCUGUUCUGCCGUGUAGUUUGGCAUAUCAUUUCGUCGCCAAUUUGAAAAUCGUUGAUAUGCAUGCGA----AGCAGC---- ---------..(((.--((.((....)----).)).)))...((((..((((.....(((((((((((((.........))))).....)))))))).)))).----.)))).---- ( -22.10) >DroSim_CAF1 45284 97 + 1 UUUUCCAGGAGAAGGAAA------------CAUUUUCCUCCUGCGCCGUGUAGUUUGGCAUAUCAUUUCGGCGCCAAUUUGAAAAUCGUUGAUAUGCAUGCGA----GGCAGG---- ......((((((((....------------).)))))))(((((..(((((......((((((((((((((.......)))))).....))))))))))))).----.)))))---- ( -28.80) >DroEre_CAF1 46213 101 + 1 UUUUCCAGCAGAAGAAAA------------UACUUUCCUCCUGCGCCGUGUAGUUUGGCAUAUCAUUUCGGCGCCAAUUUGAAAAUCGUUGAUAUGCAUGCGA----GGCAGGCGAG .......((((..((((.------------...))))...))))(((.(((.((...((((((((((((((.......)))))).....))))))))..))..----.))))))... ( -26.90) >DroYak_CAF1 46548 97 + 1 UUUUGCGGGAGAAGAAAA------------UAUUUUCCUCCUGCGCCGUGUAGUUUGGCAUAUCAUUUCGGCGCCAAUUUGAAAAUCGUUGAUAUGCAAGCGA----GGCAGG---- ....(((((((.((((..------------..)))).)))))))(((.....(((((.(((((((((((((.......)))))).....))))))))))))..----)))...---- ( -31.20) >DroAna_CAF1 49673 108 + 1 CUGUACAGGAUGGGUGAGAAUUCCAUCUCGUACCUUUCUCCU-----GUGUAGUUUGGCAUAUCAUUUCGUCGCCAAUUUGAAAAUCGUUGAUAUGCAUGCUACACAGGCAGG---- ..((((..((((((.......))))))..))))....(((((-----(((((((...(((((((((((((.........))))).....))))))))..)))))))))).)).---- ( -42.80) >consensus UUUUCCAGGAGAAGAAAA____________UACUUUCCUCCUGCGCCGUGUAGUUUGGCAUAUCAUUUCGGCGCCAAUUUGAAAAUCGUUGAUAUGCAUGCGA____GGCAGG____ ......(((((((...................)))))))(((((........((...((((((((((((((.......)))))).....))))))))..)).......))))).... (-16.46 = -17.10 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:24 2006