| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,162,939 – 20,163,029 |
| Length | 90 |
| Max. P | 0.527955 |
| Location | 20,162,939 – 20,163,029 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 87.10 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -18.89 |
| Energy contribution | -20.08 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20162939 90 - 20766785 CAU--A--UACACUCGUCCUGAGUGUUUAUAUUUUAGGUUUCGGCCUAGGAAUUUAUGGUUGCAAGC-AAACUUUAAAUGAACAUUUCGGGACAG ...--.--.......(((((((((((((((.((((((((....))))))))..(((.((((......-.)))).)))))))))).)))))))).. ( -27.40) >DroSec_CAF1 39939 92 - 1 CAU--AUAUACACUCGUCCUGAGUGUUUAUAUUUUAGGUUUCGGCCUAGGAAUUUAUGGUUGCAAGC-AAACUUUAAAUGAACAUUUCUGGGCGG ...--.........(((((.((((((((((.((((((((....))))))))..(((.((((......-.)))).)))))))))))))..))))). ( -25.70) >DroSim_CAF1 41401 92 - 1 CAU--AUAUACACUCGUCCUGAGUGUUUAUAUUUUAGGUUUCGGCCUAGGAAUUUAUGGUUGCAAGC-AAACUUUAAAUGAACAUUUCGGGGCAG ...--..........(((((((((((((((.((((((((....))))))))..(((.((((......-.)))).)))))))))).)))))))).. ( -26.80) >DroEre_CAF1 42220 90 - 1 C----AUAUACACUCGUCCUGCGUGUUUAUAUUUUAGGCUUCGGCCUAGGAAUUUAUGGUUGCAAGC-AAACUUUAAAUGAACAUUUGGGGGCAG .----..........(((((..((((((((.((((((((....))))))))..(((.((((......-.)))).)))))))))))...))))).. ( -27.60) >DroYak_CAF1 41646 94 - 1 CAUACAUAUACACUCGUCCUGCGUGUUUAUAUUUUAGGUUUGGGCCUAGGAAUUUAUGGUUGCAAGC-AAACUUUAAAUGAACAUUUCGGGGCAG ...............((((((.((((((((.((((((((....))))))))..(((.((((......-.)))).)))))))))))..)))))).. ( -24.60) >DroAna_CAF1 45787 86 - 1 CCU--ACACACACUGGGC-----UGUUUACACUUUAGGCUUCAGCCUAGAAAUUUAUGGCUGCAACAAAAACUUUAAAUGAACUUUUCGGA--CG ...--.......(((((.-----.(((((...(((((((....)))))))......((.......))...........)))))..))))).--.. ( -15.00) >consensus CAU__AUAUACACUCGUCCUGAGUGUUUAUAUUUUAGGUUUCGGCCUAGGAAUUUAUGGUUGCAAGC_AAACUUUAAAUGAACAUUUCGGGGCAG ...............(((((..((((((...((((((((....))))))))(((((.((((........)))).)))))))))))...))))).. (-18.89 = -20.08 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:22 2006