| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,149,312 – 20,149,432 |
| Length | 120 |
| Max. P | 0.935575 |
| Location | 20,149,312 – 20,149,432 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.33 |
| Mean single sequence MFE | -49.12 |
| Consensus MFE | -28.81 |
| Energy contribution | -27.82 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.71 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.935575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20149312 120 - 20766785 CAAGCAACUGACCAGUUUGAGGGAGCUGUAUCUGGGCUGGAACAGCAUUGGCAAACUAGAGUCCGGAUCUUUUGACGGAUUGCCACAUCUGCAGGUCCUUGACCUAGCCCACAACAAUCU (((((.........)))))..(((..(((...((((((......(((.(((((.......(((((..........))))))))))....)))(((((...)))))))))))..))).))) ( -33.41) >DroVir_CAF1 49873 120 - 1 UGAGCGUGUGUCCAGCCUGCGGGAACUGUAUCUGGGCUGGAACAGCAUACAACAGCUGGAGGCGCAAUCGUUUGCCGGGCUGCCGCACCUGCAGGUGCUCAACCUGGCGCACAACAAUCU ...((((.(.((((((((((((...))))....)))))))).((((........)))).).))))....((.(((((((.((..(((((....))))).)).))))))).))........ ( -50.10) >DroPse_CAF1 36917 120 - 1 CGCCAAGCUGAGCAGCCUGCGGGAGCUGUACCUGGGCUGGAACAGCAUUUCCCAGGUGGAGGCGCAGACCUUCGCCGGUCUGCCCCAUCUGCAGGUGCUCGAUCUGGCGCACAACAACCU (((((.(.((((((.((((((((((((((.((......)).)))))...))))((((((.(((..(((((......))))))))))))))))))))))))).).)))))........... ( -61.70) >DroMoj_CAF1 60177 120 - 1 CGCUCGCAUCGUCAGCCUGAAGGAGCUUUAUCUGGGCUGGAACAGCAUCCAGCUGCUGGAGCCGCAGGCCUUUGCCGGCUUGCCCCAUCUGCAGGUCCUGAACUUGGCUCACAACAAUCU ..........((.((((...((((.((.((..((((..((..(((((......)))))...))(((((((......)))))))))))..)).)).))))......)))).))........ ( -42.80) >DroAna_CAF1 38513 120 - 1 CAAGCAGCUGACCAGUCUGCGGGAGCUCUACUUGGGCUGGAACAGCAUCACCCAGGUGGAUGCGGGAGCCUUCGACGGCCUGCCCCACCUGCAGACCCUCGACUUGGCCCACAACAACAU ((((....(((...(((((((((.((((((((((((.(((.......))))))))))))).))(((.(((......)))...)))..)))))))))..))).)))).............. ( -46.60) >DroPer_CAF1 36358 120 - 1 CGCCAAGCUGAGCAGCCUGCGGGAGCUGUACCUGGGCUGGAACAGCAUUUCGCAGGUGGAGGCGCAGACCUUCGCCGGUCUGCCCCAUCUGCAGGUGCUCGAUCUGGCGCACAACAACCU (((((.(.((((((.((((((..((((((.((......)).))))).)..)))))(..((((.(((((((......))))))).)).))..).).)))))).).)))))........... ( -60.10) >consensus CGAGCAGCUGACCAGCCUGCGGGAGCUGUACCUGGGCUGGAACAGCAUUCCCCAGCUGGAGGCGCAAACCUUCGCCGGCCUGCCCCAUCUGCAGGUCCUCGACCUGGCGCACAACAACCU ........(((...(((((((((.(((((.((......)).)))))..............((.(((((((......))))))).)).)))))))))..)))................... (-28.81 = -27.82 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:20 2006